View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18156_low_20 (Length: 510)
Name: NF18156_low_20
Description: NF18156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18156_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 457; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 11 - 491
Target Start/End: Original strand, 14177367 - 14177847
Alignment:
| Q |
11 |
tcgaagaatatagtcaatgtctgtggagatgtgttgaagaaaaatattgcttcattgggaccattggttttaccatggagggagcaattcctatatgtcg |
110 |
Q |
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| T |
14177367 |
tcgaagaacatagtcaatgtttgtggagatgtgttgaagaaaaatattgcttcattgggaccattggttttaccatggagggagcaattcttatatgtcg |
14177466 |
T |
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| Q |
111 |
tttcaattatttatcacaaactttggagtagaagaagaagaacaagcatatatactccgaaattcaatagggcttttgagcatttctgcatacattcagg |
210 |
Q |
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| T |
14177467 |
tttcaattatttatcacaaactttggagtagaagaagaagaacaagcatatatactccgaaattcaatagggcttttgagcatttctgcatacattcagg |
14177566 |
T |
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| Q |
211 |
aggaagagctgttatacaagccattgagaaaaatttgaagctaaggagagaggatgttgagccatcaaaaatgactctgtacagatttggaaacacttca |
310 |
Q |
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| T |
14177567 |
aggaagagctgttatacaagccattgagaaaaatttgaagctaaggagagaggatgttgaaccatcaaaaatgactctgtacagatttggaaacacttca |
14177666 |
T |
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| Q |
311 |
tcttcttcaatttggtatgagttgtcatatattgaagcaaaagggaggatgaaatgtggagatagggtgtggcaaattgcctttggaagtggattcaagt |
410 |
Q |
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| T |
14177667 |
tcttcttcaatttggtatgagttgtcatacattgaagcaaaagggaggatgaaatgtggagatagggtgtggcaaattgcctttggaagtggattcaagt |
14177766 |
T |
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| Q |
411 |
gtaacagtgcagtgtggaagtgtttaggtgacgtgaagcctgataccaccactgcgtggagagacactattcactcatacc |
491 |
Q |
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| T |
14177767 |
gtaacagtgcagtgtggaaatgtttaggtgacgtgaagcctgataccaccactgcgtggagagacactattcactcatacc |
14177847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 380 - 432
Target Start/End: Original strand, 794325 - 794377
Alignment:
| Q |
380 |
tggcaaattgcctttggaagtggattcaagtgtaacagtgcagtgtggaagtg |
432 |
Q |
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| T |
794325 |
tggcaaattggctttggaagtggtttcaagtgtaacagtgctgtctggaagtg |
794377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 429
Target Start/End: Complemental strand, 23271461 - 23271370
Alignment:
| Q |
338 |
tatattgaagcaaaagggaggatgaaatgtggagatagggtgtggcaaattgcctttggaagtggattcaagtgtaacagtgcagtgtggaa |
429 |
Q |
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| T |
23271461 |
tatattgaatcaaaaggaaggatgaagagaggtgatagagtatggcaaatagcttttggaagtggatttaaatgcaatagtgctgtgtggaa |
23271370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 400 - 430
Target Start/End: Original strand, 46572880 - 46572910
Alignment:
| Q |
400 |
tggattcaagtgtaacagtgcagtgtggaag |
430 |
Q |
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| T |
46572880 |
tggattcaagtgtaacagtgcagtgtggaag |
46572910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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