View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18156_low_26 (Length: 441)
Name: NF18156_low_26
Description: NF18156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18156_low_26 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 15 - 441
Target Start/End: Original strand, 34317318 - 34317749
Alignment:
| Q |
15 |
agttaccagattttttgccgttctgcctcagccaacgtaattacttgtgtctttttctacgtgaatttaactgtaagagtatcccataagacgacataaa |
114 |
Q |
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| T |
34317318 |
agttaccagattttttgccgttctgcctcagccaacgtaattacttgtgtctttttctacgtgaatttaactgtaagagtatcccataagacgacataaa |
34317417 |
T |
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| Q |
115 |
acg--tatagnnnnnnnnnnnnnnnnaatgtgaaagata--ctaataatactataaatctaaggtaattaagaaacaaagaatgcacattttcttttgga |
210 |
Q |
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| T |
34317418 |
acgcatatagacacacaacacacacaaatgtgaaagatatactaataatactataaatctaaggtaattaagaaacaaagaatgcacattttcttttgga |
34317517 |
T |
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| Q |
211 |
gaacacaaacatcagcagagatggtatcaaagtgctaaatcgaatctctgaggacatatgcttgaatggtaagccaaagaaaatgatgtagaagaaatca |
310 |
Q |
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| T |
34317518 |
gaacacaaacatcagcagagatggtatcaaagtgctaaatcgaatctctgaggacatatgcttgaatggtaagccaaagaaaatgatgtagaagaaatca |
34317617 |
T |
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| Q |
311 |
agaaacta-tataactggcaaaaatagtaaacgtgttttagtgtaacatatacgtgtttcttaaactgggttggtgtggatttctaaaaatcaaatttgt |
409 |
Q |
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| T |
34317618 |
agaaactattataactggcaaaaatagtatacgtgttttagtggaacatatacgtgtttcttaaactgggttggtgtggatttctaaaaatcaaatttgt |
34317717 |
T |
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| Q |
410 |
ttgctaagaaaatatataaagaagaaaagtcc |
441 |
Q |
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| T |
34317718 |
ttggtaagaaaatatataaagaagaaaagtcc |
34317749 |
T |
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