View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18156_low_29 (Length: 406)
Name: NF18156_low_29
Description: NF18156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18156_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 104 - 396
Target Start/End: Original strand, 13118143 - 13118438
Alignment:
| Q |
104 |
atatagtaactacttgagacgaagatcttttgctgccaaaccattgacttgtaaaatattggtatcaatctcagataaaat---ggtagagtgatgatga |
200 |
Q |
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| T |
13118143 |
atatagtaactacttgagacaaagattttttgctgccaaaccattgagttgtaatgtattggtatcaatctcagataaaatagtggtagagtgatgatga |
13118242 |
T |
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| Q |
201 |
ggaatagtgacaacaacttttccccaagctctaccagtttcaatataaccaaatgcatcaatcacattctcaaaatcatattcaccttttggatcaatca |
300 |
Q |
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| T |
13118243 |
ggaatagtgacaacaactttaccccaagctcttccagtttcaatataaccaaatgcatcaatcacattctcaaaatcatattcaccttttggatcaatca |
13118342 |
T |
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| Q |
301 |
ctgctttcaactctcctctttccaaatatggtctcagcttttccaatatttcacctgacactgtcaaacttgaataaactgcttttggatgtgatg |
396 |
Q |
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| T |
13118343 |
cagcttttaactctcctctttccaaatatggtctcagcttttccaatatttcaccacaaactgtcaaacttgaataaactgctctttcatgtgatg |
13118438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 103 - 396
Target Start/End: Complemental strand, 13009313 - 13009008
Alignment:
| Q |
103 |
aatatagtaactacttgagacgaagatcttttgctgccaaaccattgacttgtaaaatattggtatcaatctcagataaaatggtagagtgatgat---- |
198 |
Q |
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| T |
13009313 |
aatatattaactacttgaggcaaagatcttttgca---aaaccattgacttgtggtatattggtatcaatctcagataaaatggtagagtgacgatcttt |
13009217 |
T |
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| Q |
199 |
--gaggaatag---------tgacaacaacttttccccaagctctaccagtttcaatataaccaaatgcatcaatcacattctcaaaatcatattcacct |
287 |
Q |
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| T |
13009216 |
tggtgccatagggaagcatgtgacaacaacttttccccaagctcttccagtttcaatgtaaccaaatgcatcaatcacattctcaaaatcatattcacct |
13009117 |
T |
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| Q |
288 |
tttggatcaatcactgctttcaactctcctctttccaaatatggtctcagcttttccaatatttcacctgacactgtcaaacttgaataaactgcttttg |
387 |
Q |
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| T |
13009116 |
tttggatcaatcacagcttttaactctcctctttccaaatatggtctcagcttttccaatatttcaccacaaactgtcaaacttgaataaactgctcttt |
13009017 |
T |
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| Q |
388 |
gatgtgatg |
396 |
Q |
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|||||||| |
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| T |
13009016 |
catgtgatg |
13009008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 18668057 - 18668021
Alignment:
| Q |
23 |
aacttcaattacacaaattacaacattttcacataca |
59 |
Q |
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| T |
18668057 |
aacttcaattacacaaattacatcattttcacataca |
18668021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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