View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18156_low_30 (Length: 401)
Name: NF18156_low_30
Description: NF18156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18156_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 9 - 400
Target Start/End: Original strand, 25981406 - 25981811
Alignment:
| Q |
9 |
ataagcaccattggtgtatcgttggttgtggtagtggtgtgagaaaccatattttctctcatggctcccaccatgacggaggaggagttacctgaatgtg |
108 |
Q |
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| T |
25981406 |
ataagcaccattggtgtatcgttggttgtggtagtggtgtgagaaaccatatttgctctcatggctcccatcatgacagaggag---ttacctgaatgtg |
25981502 |
T |
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| Q |
109 |
ttgaaaatctcacagggttgttaactaaggactcattcttggagttaggggagaaaaatgagggagggg-ttttgttgtttgccattattagggataggt |
207 |
Q |
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| T |
25981503 |
ttgaaaatctcacagggttgttaactaaggactcattcttggagttaggggagaaaaatgagggagggggttttgttgtttgccattattagggataggt |
25981602 |
T |
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| Q |
208 |
atttgttgatgaagaatcaaacaatgagaaggtgtatttatagtggtctctgaattgagtctttggttgacaatgagaattattttatgtatttttcatt |
307 |
Q |
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| T |
25981603 |
atttgatgatgaagaatcaagcaatgagaaggtgtatttatagtggtctctgaattgagtctttggttgacaatgagaattattttatgtatttttcatt |
25981702 |
T |
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| Q |
308 |
ctagaaggcatcaattaatttttcaattagtattcttcagagtgtgtg----------------tatattcaactgttgatgagaattttggaatgttta |
391 |
Q |
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| T |
25981703 |
ctagaaggcatcaatcaatttttcaattagtattcttcagagtgtgtgtgtgtgtgtgtgtatatatatttaactgttgatgagaattttggaatgttta |
25981802 |
T |
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| Q |
392 |
aaaattgca |
400 |
Q |
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| T |
25981803 |
aaaattgca |
25981811 |
T |
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