View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18156_low_32 (Length: 398)
Name: NF18156_low_32
Description: NF18156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18156_low_32 |
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Alignment Details
Target: chr8 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 18 - 389
Target Start/End: Original strand, 7622838 - 7623209
Alignment:
| Q |
18 |
caaacaaagtcctaattaaaggccaggtatggaggatctcatgtcttccaaagataatcttacaacgatcacaatttgattactttcatgctcccaattc |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
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| T |
7622838 |
caaacaaagtcctaattaaaggccaggtatggaggatctcatgtcttccaaagataatcttacaagggtcacaatttgattactttcatgctcccaattc |
7622937 |
T |
|
| Q |
118 |
ataaggtttcaagcttcgaggggctttt-ctcttggaagatagaagaaacatttgctcacaatttgacaattatgtatccatgaaagtgattattaacat |
216 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
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| T |
7622938 |
ataaggtttcaagcttcgaggggctttttctcttggaagatagaagaaacatttgctcacaatttgacaattatgtatccatgaaagtgattacta-cat |
7623036 |
T |
|
| Q |
217 |
taacatatagtcaaacaataattataactacttcactatgcctggacgatacatgtccacgatttcattcccaattcttaatgtatagggtgaagtgcat |
316 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
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| T |
7623037 |
taacatatagtcaaacaataattatcactacttcactatgcctggacgatacatgtccacgatttcatccccaattcttaatgtatagggtgaagtgcgt |
7623136 |
T |
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| Q |
317 |
atatagtttccataatcggaaagggtagtgtgtggtaaacactataaatggtatcaattgccctatcctatgc |
389 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
7623137 |
atatagtttccataatcggaaagggtagtgtgtggtaatcactataaatggtatcaattgccctatcctatgc |
7623209 |
T |
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