View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18156_low_34 (Length: 389)
Name: NF18156_low_34
Description: NF18156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18156_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 17 - 219
Target Start/End: Original strand, 31506386 - 31506588
Alignment:
| Q |
17 |
ataataatcatgaattgaagcttcccatacatattttattatcttactatagctatagaatctggatcctcattcctatgaacctaacagtttcttaagc |
116 |
Q |
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| T |
31506386 |
ataataatcatgaattgaagcttcccatacatattttattatcttactatagttatagaatctggatcctcattcctatgaacctaacagtttcttaagc |
31506485 |
T |
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| Q |
117 |
tgcaacataataccgcagttgtggagaattcaattttgaaggaatgatacttttcttgttattaaagagtctagcagcaaaactcacatacttaaagtgc |
216 |
Q |
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| T |
31506486 |
tgcaacataataccgcagttgtggagaattcaattttgaaggaatgatacttttcttgttattaaagagtctagcagcaaaactcacatacttaaagtgc |
31506585 |
T |
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| Q |
217 |
ata |
219 |
Q |
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||| |
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| T |
31506586 |
ata |
31506588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 221 - 372
Target Start/End: Original strand, 31506697 - 31506848
Alignment:
| Q |
221 |
ttgaggggactgatatagttaattgtgtaaaggtttttgataaagatttggtgttcaattactcaaagtagagtgtgatgatctcttatgcttgcctcat |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31506697 |
ttgaggggactgatatagttaattgtgtaaaggtttttgataaagatttggtgttcaattactcaaagtagagtgtgatgatctcttatgcttgcctcat |
31506796 |
T |
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| Q |
321 |
aacgcaacatatatcaaatattcttacatcctactatcatttaagctgcact |
372 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31506797 |
aacgcaacatatatcaaatattcttacatcctactatcatttaagctgcact |
31506848 |
T |
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