View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18156_low_36 (Length: 371)
Name: NF18156_low_36
Description: NF18156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18156_low_36 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 13 - 371
Target Start/End: Original strand, 33688924 - 33689282
Alignment:
| Q |
13 |
aatatcaatattttggagcatgaaaatatggaactcgtcaattttcttctacaatagctttaactatatcataaggatttagtttacacatgccatttga |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33688924 |
aatatcaatattttggagcatgaaaatatggaactcgtcaattttcttctacaatagctttaactatatcataaggatttagtttacacatgccatttga |
33689023 |
T |
|
| Q |
113 |
tttccatgtgctgcctaaatagccattaatcttctagtacacattaagaatgtatgttgacttatactataacgtttatatgtctaattatacgtactat |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33689024 |
tttccatgtgctgcctaaatagccattaatcttctagtacacattaagaatgtatgttgacttatactataacgtttatatgtctaattatacgtactat |
33689123 |
T |
|
| Q |
213 |
atatgctataagtcttgggtagtgaacttaagtttaattgccatttctccatttatccaaagtcttacatttcttcattttatcatcaaatttatcttga |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
33689124 |
atatgctataagtcttgggtagtgaacttaagtttaattgccatttctccatttatccaaagttttacatttcttcattttatcatcaaattcatcttga |
33689223 |
T |
|
| Q |
313 |
aaaggtaaaagaatattctgttaattaactatatttgcagaaataatactcttcaaatt |
371 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
33689224 |
aaaagtaaaagaatattctgttaattaactatatttgcagaaataacactcttcaaatt |
33689282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University