View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18156_low_38 (Length: 368)
Name: NF18156_low_38
Description: NF18156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18156_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 13 - 259
Target Start/End: Complemental strand, 1264548 - 1264302
Alignment:
| Q |
13 |
catcatgcagcacaataatattgtaaaacaaattcattcaaaggaagcagatgcagggggtggaggatcaaccaaaaatttatcaagaagttgatcaatg |
112 |
Q |
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| T |
1264548 |
catcatccagcacaataatattgtaaaacaaattcattcaaaggaagcagatgcagggggtggaggatcaaccaaaaatttatcaagaagttgatcaatg |
1264449 |
T |
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| Q |
113 |
gacatgtaattataattaggatatatttgtgaagcttcaaggtcatcttcccctagctcaaagttcacaaggtcccctttaacaaatacactatgaagaa |
212 |
Q |
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| T |
1264448 |
gacatgtaattataattaggatatagttgtgaagcttcaaggtcatcttcctctagctcaaagttcacaaggtccccttgaacaaatacactatgaagaa |
1264349 |
T |
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| Q |
213 |
tggaaactggtatattgtgtggagggggtaaaactgcattacaaatg |
259 |
Q |
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| T |
1264348 |
tggaaactggtatattgtgtggagggggtaaaactgcattacaaatg |
1264302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 45 - 251
Target Start/End: Original strand, 1335918 - 1336121
Alignment:
| Q |
45 |
ttcattcaaaggaagcagatgcagggggtggaggatcaaccaaaaatttatcaagaagttgatcaatggacatgtaattataattaggatatatttgtga |
144 |
Q |
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| T |
1335918 |
ttcattcaaaagcagcagatacagggggtggaggatcaacaagaaatttatcaagaagttgatcaatggatgtgtagttgtaatttggatatagttgtga |
1336017 |
T |
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| Q |
145 |
agcttcaaggtcatcttcccctagctcaaagttcacaaggtcccctttaacaaatacactatgaagaatggaaactggtatattgtgtggagggggtaaa |
244 |
Q |
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| T |
1336018 |
agcttcaaggtcattttcctctagctcaaagtac---atgtcgcctttaacaaatatgctatgaacgatggaaattggaatatcttctggagggggtaaa |
1336114 |
T |
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| Q |
245 |
actgcat |
251 |
Q |
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|||||| |
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| T |
1336115 |
gctgcat |
1336121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 65 - 251
Target Start/End: Original strand, 1320426 - 1320612
Alignment:
| Q |
65 |
gcagggggtggaggatcaaccaaaaatttatcaagaagttgatcaatggacatgtaattataattaggatatatttgtgaagcttcaaggtcatcttccc |
164 |
Q |
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| T |
1320426 |
gcagggggtatagggtcaacaagaaatttatcaagaagttgatcaattgatgtatagttgtaaccagggtatagttgtgaagcttcaagatcatcttcct |
1320525 |
T |
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| Q |
165 |
ctagctcaaagttcacaaggtcccctttaacaaatacactatgaagaatggaaactggtatattgtgtggagggggtaaaactgcat |
251 |
Q |
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| T |
1320526 |
ctagctcaaagtttgccatgtcacctctaacaaatatgctatgaatgatggaaattggaatatcttctggagggggtaaagctgcat |
1320612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 163 - 256
Target Start/End: Complemental strand, 1284059 - 1283974
Alignment:
| Q |
163 |
ccctagctcaaagttcacaaggtcccctttaacaaatacactatgaagaatggaaactggtatattgtgtggagggggtaaaactgcattacaa |
256 |
Q |
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| T |
1284059 |
ccctagctcaaagttcacaaggtctcctttaacaaata--------agaatggaaactggtatactgtgtggagggggtaaaactgcatcacaa |
1283974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 20 - 93
Target Start/End: Complemental strand, 1284167 - 1284094
Alignment:
| Q |
20 |
cagcacaataatattgtaaaacaaattcattcaaaggaagcagatgcagggggtggaggatcaaccaaaaattt |
93 |
Q |
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| T |
1284167 |
cagcacaatgatattgtaaaagaacttcattcaaatgcagcagatgcagggggtggaggatcaacaagaaattt |
1284094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 330 - 368
Target Start/End: Complemental strand, 1264233 - 1264195
Alignment:
| Q |
330 |
tatgttgaataaaagagtcttactttgtgatagcttgac |
368 |
Q |
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| T |
1264233 |
tatgttgaataaaagagtcttactttgtgatagcttgac |
1264195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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