View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18156_low_39 (Length: 357)

Name: NF18156_low_39
Description: NF18156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18156_low_39
NF18156_low_39
[»] chr4 (2 HSPs)
chr4 (1-342)||(34317876-34318216)
chr4 (290-342)||(2071342-2071394)
[»] chr7 (4 HSPs)
chr7 (1-337)||(33821812-33822151)
chr7 (1-342)||(23897791-23898135)
chr7 (7-342)||(7319596-7319934)
chr7 (1-61)||(31394902-31394962)
[»] chr1 (1 HSPs)
chr1 (1-342)||(33575790-33576133)
[»] scaffold0027 (1 HSPs)
scaffold0027 (168-342)||(150324-150500)
[»] chr2 (1 HSPs)
chr2 (194-247)||(7300382-7300435)


Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 34317876 - 34318216
Alignment:
Q  1 cctatcacaaggtgtatcaaggaagtcgccccaagaaacaatcagtcaagtataataattacagaaacacggtcagtacccaaataaataaaagggtccg 100  Q
    ||||| |||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  34317876 cctattacaaggtgtaccaaggaagtcgtcccaagaaacaaccagtcaagtataataattacagaaacacggtcagtacccaaacaaataaaaaggtccg 34317975  T
Q  101 accatcatatatgagaaccgtacatgaatgtgacattattagctttctgcagccatcaaagcgaatagtatttaactctatctaaaagctgcacaatgga 200  Q
    |||| ||| ||||||||||||||||||||||| ||||||||||   || |||||| |||||||| | ||||||||||||||||||||||||||||||||     
T  34317976 accaccatctatgagaaccgtacatgaatgtggcattattagc---cttcagccaccaaagcgagtggtatttaactctatctaaaagctgcacaatggg 34318072  T
Q  201 ggcttggatgttattaaaaatcccgttgttgcattcatttcaaaccagccaaacatacaaaagccataaaagcttaagaaacaa--gacgcttcttcgaa 298  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||  ||||||||||||||    
T  34318073 ggcttggatgttattaaaaatctcgttgttgcattcattccaaaccagccaaacatacaaaagccataaaaacttaagaaacaatcgacgcttcttcgaa 34318172  T
Q  299 tgacttgtataatgaataaactgaaaaaagtggtcactaatatt 342  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  34318173 tgacttgtataatgaataaactgaaaaaagtggtcactaatatt 34318216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 342
Target Start/End: Original strand, 2071342 - 2071394
Alignment:
Q  290 ttcttcgaatgacttgtataatgaataaactgaaaaaagtggtcactaatatt 342  Q
    ||||||||||||| | || ||||||||||||||| ||| | ||||||||||||    
T  2071342 ttcttcgaatgacctctacaatgaataaactgaataaaatagtcactaatatt 2071394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 137; Significance: 2e-71; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 33822151 - 33821812
Alignment:
Q  1 cctatcacaaggtgtatcaaggaagtcgccccaagaaacaatcagtcaagtataataattacagaaacacggtcagt----acccaaataaataaaaggg 96  Q
    |||| ||||||||||| |||||||| |  | |||||||||||||||||||||| ||||||||| |||||||||||||    ||||||| |||| ||||||    
T  33822151 cctagcacaaggtgtaccaaggaagccatctcaagaaacaatcagtcaagtattataattacaaaaacacggtcagtcgatacccaaacaaatcaaaggg 33822052  T
Q  97 tccgaccatcatatatgagaaccgtacatgaatgtgacattattagctttctgcagccatcaaagcgaatagtatttaactctatctaaaagctgcacaa 196  Q
    |||||| | ||| ||||||||||||||||||| |||||||||||||| |||   ||||| ||||  || | |||||||||||||||||||||||| | ||    
T  33822051 tccgactaccatctatgagaaccgtacatgaaagtgacattattagccttc---agccaccaaaatgagtggtatttaactctatctaaaagctgaataa 33821955  T
Q  197 tggaggcttggatgttattaaaaatcccgttgttgcattcatttcaaaccagccaaacatacaaaagccataaaagcttaagaaacaa--gacgcttctt 294  Q
    ||| | ||||||||||||||||||||| ||| || |  ||||| |||||| |||||||  ||||||||||||||||||  |||||| |  ||| || |||    
T  33821954 tggggacttggatgttattaaaaatcctgttattacgctcattccaaacctgccaaactcacaaaagccataaaagctgtagaaacgatcgaccctgctt 33821855  T
Q  295 cgaatgacttgtataatgaataaactgaaaaaagtggtcacta 337  Q
    ||| |||| ||||||||||||||||||||||||||| ||||||    
T  33821854 cgagtgacctgtataatgaataaactgaaaaaagtgatcacta 33821812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 23897791 - 23898135
Alignment:
Q  1 cctatcacaaggtgtatcaaggaagtcgccccaagaaacaatcagtcaagtataataattacagaaacacggtcag----tacccaaataaataaaaggg 96  Q
    |||| |||||||| || |||||||| |  |||||||||||||||||||||||||||||||||| ||||||||||||    |||| ||| |||| ||||||    
T  23897791 cctagcacaaggtataccaaggaagccatcccaagaaacaatcagtcaagtataataattacaaaaacacggtcagccgatacctaaacaaatcaaaggg 23897890  T
Q  97 tccgaccatcatatatgagaaccgtacatgaatgtgacattattagctttctgcagccatcaaagcgaatagtatttaactctatctaaaagctgcacaa 196  Q
    |||||| | ||| ||| ||||||||||||||| ||||||||||||    ||| |||||||||||  || | ||||||||||||||||||||| |||| ||    
T  23897891 tccgactaccatctataagaaccgtacatgaaagtgacattatta---atcttcagccatcaaaatgagtggtatttaactctatctaaaagttgcataa 23897987  T
Q  197 tggaggcttggatgttattaaaaatcccgttgttgcattcatttcaaaccagccaaacatacaaaagccataaaagcttaagaaacaa--gacgcttctt 294  Q
    ||| || |||||||||||||||||||  ||| || |  ||||| |||||  |||||||| |||||||||||||||||   |||||| |  ||||||||||    
T  23897988 tgggggtttggatgttattaaaaatcatgttattacgctcattccaaacttgccaaacacacaaaagccataaaagccgtagaaacgatcgacgcttctt 23898087  T
Q  295 cgaatgacttgtataatgaataaactgaaaaaagtggtcactaatatt 342  Q
    ||| |||| |||| |||||||||||||||||||||| |||||||||||    
T  23898088 cgagtgacctgtacaatgaataaactgaaaaaagtgatcactaatatt 23898135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 7 - 342
Target Start/End: Complemental strand, 7319934 - 7319596
Alignment:
Q  7 acaaggtgtatcaaggaagtcgccccaagaaacaatcagtcaagtataataattacagaaacacggtcag----tacccaaataaataaaagggtccgac 102  Q
    ||||| |||| ||||||||||  |||||||||||||||||||||| ||||||||||| ||||||||| ||    |||||||| |||| | ||||||||||    
T  7319934 acaagatgtaccaaggaagtcatcccaagaaacaatcagtcaagtgtaataattacaaaaacacggttagtcgatacccaaacaaatcatagggtccgac 7319835  T
Q  103 catcatatatgagaaccgtacatgaatgtgacattattagctttctgcagccatcaaagcgaatagtatttaactctatctaaaagctgcacaatggagg 202  Q
    || ||| ||| | ||||||||||||| ||| |||||||| |   || || ||| || | ||| | |||||||||||||||||||||||||| ||||| ||    
T  7319834 caccatctataaaaaccgtacatgaaagtggcattattaac---cttcaaccaccacaacgagtggtatttaactctatctaaaagctgcataatggggg 7319738  T
Q  203 cttggatgttattaaaaatcccgttgttgcattcatttcaaaccagccaaacatacaaaagccataaaagcttaagaaacaa--gacgcttcttcgaatg 300  Q
     ||||||||| |||||||||| ||| ||    ||||| |||||| | |||||| ||||||| |||||||| |  |||||  |  ||||||||||||| ||    
T  7319737 tttggatgttgttaaaaatcctgttattatgctcattccaaacctgtcaaacacacaaaagtcataaaagttgtagaaaggatcgacgcttcttcgagtg 7319638  T
Q  301 acttgtataatgaataaactgaaaaaagtggtcactaatatt 342  Q
     | ||||||||||||||| ||||||||||| |||||||||||    
T  7319637 gcctgtataatgaataaattgaaaaaagtgatcactaatatt 7319596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 31394902 - 31394962
Alignment:
Q  1 cctatcacaaggtgtatcaaggaagtcgccccaagaaacaatcagtcaagtataataatta 61  Q
    |||| |||||||||||  ||||||| |  ||||||||||||||| ||||||||||||||||    
T  31394902 cctagcacaaggtgtactaaggaagccatcccaagaaacaatcaatcaagtataataatta 31394962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 8e-46; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 33575790 - 33576133
Alignment:
Q  1 cctatcacaaggtgtatcaaggaagtcgccccaagaaacaatcagtcaagtataataattacagaaacacggtcagt----acccaaataaataaaaggg 96  Q
    |||| |||||| |||| |||| |||||  ||||| |||||| ||||||||| |||||||||||  ||||||||| ||    ||||||| |||  | ||||    
T  33575790 cctagcacaagatgtaccaagaaagtcatcccaaaaaacaa-cagtcaagtgtaataattacaataacacggtcggtcaatacccaaacaaagcataggg 33575888  T
Q  97 tccgaccatcatatatgagaaccgtacatgaatgtgacattattagctttctgcagccatcaaagcgaatagtatttaactctatctaaaagctgcacaa 196  Q
    | |||||| ||| ||| |||||||||||| || |||||||||||| | |||   | ||| || | ||||| |||||||||||||||||| ||||||| ||    
T  33575889 ttcgaccaccatctataagaaccgtacattaaagtgacattattaaccttc---aaccaccacaacgaatggtatttaactctatctaagagctgcataa 33575985  T
Q  197 tggaggcttggatgttattaaaaatcccgttgttgcattcatttcaaaccagccaaacatacaaaagccataaaagcttaagaaacaa--gacgcttctt 294  Q
    ||| || |||| |||| |||||||||  ||| ||   |||||| |||||| |||||||| ||||||||||||||||||  |||||| |  ||||||||||    
T  33575986 tgggggtttgggtgttgttaaaaatcatgttattatgttcattccaaacctgccaaacacacaaaagccataaaagctgtagaaacgatcgacgcttctt 33576085  T
Q  295 cgaatgacttgtataatgaataaactgaaaaaagtggtcactaatatt 342  Q
    ||| |||| || | |||||||||||||||||||||| |||||||||||    
T  33576086 cgagtgacctgaacaatgaataaactgaaaaaagtgatcactaatatt 33576133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 168 - 342
Target Start/End: Original strand, 150324 - 150500
Alignment:
Q  168 gtatttaactctatctaaaagctgcacaatggaggcttggatgttattaaaaatcccgttgttgcattcatttcaaaccagccaaacatacaaaagccat 267  Q
    ||||||||||||||||||||| |||| ||||| || |||||||||||||||||||| ||| || |  |||||  ||||| |||||||| |||||||||||    
T  150324 gtatttaactctatctaaaagttgcataatgggggtttggatgttattaaaaatcctgttattacgctcattcaaaacctgccaaacacacaaaagccat 150423  T
Q  268 aaaagcttaagaaacaa--gacgcttcttcgaatgacttgtataatgaataaactgaaaaaagtggtcactaatatt 342  Q
    ||||||   |||||| |   |||||||||||| |||| |||| |||||||||| ||||||||||| |||||||||||    
T  150424 aaaagcggtagaaacgatcaacgcttcttcgagtgacctgtacaatgaataaattgaaaaaagtgatcactaatatt 150500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 247
Target Start/End: Original strand, 7300382 - 7300435
Alignment:
Q  194 caatggaggcttggatgttattaaaaatcccgttgttgcattcatttcaaacca 247  Q
    |||||| || ||||||||||||||| |  ||||||||||||||||| |||||||    
T  7300382 caatgggggtttggatgttattaaatagtccgttgttgcattcattccaaacca 7300435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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