View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18156_low_43 (Length: 343)
Name: NF18156_low_43
Description: NF18156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18156_low_43 |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 119 - 337
Target Start/End: Complemental strand, 32795829 - 32795607
Alignment:
| Q |
119 |
tttggtttatagtagtaataacaagttttcaatattcatcattgtgttattattgtataata----tatcttcacaatgatttgatacgtgggaacaata |
214 |
Q |
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| T |
32795829 |
tttggtttatagtagcaataacaagttttcaatatttatcattgtgttattattgtataataaatatatcttcacaatgatttgatacgtgggaacaata |
32795730 |
T |
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| Q |
215 |
cataatgtggacacaaacaagaatttgttaagaagcttccaagagactataaggattggtccctcaactagtgaactttgaatagaagacaaacagacca |
314 |
Q |
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| T |
32795729 |
cataatgtggacacaaacaagaatttgttaaggagcttccaagagactataaggattgatccctcaaccagtgaactttgaatagaagacaaacagacca |
32795630 |
T |
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| Q |
315 |
attgaaagatatagtgatgatgt |
337 |
Q |
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||||||||||| ||||||||||| |
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| T |
32795629 |
attgaaagatacagtgatgatgt |
32795607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 17 - 127
Target Start/End: Complemental strand, 32796129 - 32796019
Alignment:
| Q |
17 |
acatgctaaactcaataatgattttgtggattgcactatgtcggaatcatgcatgaaattgaccatagagctcccggcaagaagaataagatgggacttg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32796129 |
acatgctaaactcaataatgattttgtggattgcactatgtcggaatcatgcatgaaattgaccatagagctcccggcaagaagaataagatgggacttg |
32796030 |
T |
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| Q |
117 |
tatttggttta |
127 |
Q |
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| T |
32796029 |
tatttggttta |
32796019 |
T |
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