View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18156_low_45 (Length: 340)
Name: NF18156_low_45
Description: NF18156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18156_low_45 |
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| [»] scaffold0380 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 22023212 - 22023529
Alignment:
| Q |
1 |
gtggatgtgaaagcaaaattccgtttgcaagtacaggtgttcaagatattcagttaattgaaccaaacaactaactgaattgtattgaaccatatgttaa |
100 |
Q |
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| T |
22023212 |
gtggatgtgaaagcaaaattccgtttgca------ggtgttgaagatattcagttaattgaaccaaacaactaactgaattgtattgaaccatatgttaa |
22023305 |
T |
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| Q |
101 |
ctgcaccactttacacagttttgaactgaaccacttttttaaaaccaatactaacaagctggatgtgaaacacaatagtcaatagtggccgatagtgg-a |
199 |
Q |
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| T |
22023306 |
ctgcaccacttcacacagttttgaactgaaccacttttttaaaaccaatactaacaagctggatgtgaaacacaatagtcaatagtggccgatagtggca |
22023405 |
T |
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| Q |
200 |
ctatagctgccgcgcgtaacgtagcggtgatgaactcttcctatattttcacatgttcccttcctctcttccactattcagattcattttgttctcttcc |
299 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22023406 |
ctatagctgccgagcgtaacgtagcggtgatgaactcttcctatattttcacttgatcccttcctctcttccactattcagattcattttgttctcttcc |
22023505 |
T |
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| Q |
300 |
tttgttttctcttcatctgttctt |
323 |
Q |
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|||||||||||||||||||||||| |
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| T |
22023506 |
tttgttttctcttcatctgttctt |
22023529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 78 - 149
Target Start/End: Complemental strand, 42930212 - 42930141
Alignment:
| Q |
78 |
aattgtattgaaccatatgttaactgcaccactttacacagttttgaactgaaccacttttttaaaaccaat |
149 |
Q |
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| T |
42930212 |
aattgtattcaaccatattttaactgatccactttatacagttttgaactaaaccactttttaaaaaccaat |
42930141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 305
Target Start/End: Original strand, 19635891 - 19635937
Alignment:
| Q |
259 |
cttcctctcttccactattcagattcattttgttctcttcctttgtt |
305 |
Q |
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| T |
19635891 |
cttcctctcttccactgttcaggttcattttgttctattcctctgtt |
19635937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 323
Target Start/End: Original strand, 50741078 - 50741135
Alignment:
| Q |
266 |
tcttccactattcagattcattttgttctcttcctttgttttctcttcatctgttctt |
323 |
Q |
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| T |
50741078 |
tcttccactgttcaggttcattttgttctcttcctctgtctttttttcctctgttctt |
50741135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0380 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0380
Description:
Target: scaffold0380; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 305
Target Start/End: Complemental strand, 10920 - 10874
Alignment:
| Q |
259 |
cttcctctcttccactattcagattcattttgttctcttcctttgtt |
305 |
Q |
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|||||||||||||||| ||||| ||||||||||||||||||| |||| |
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| T |
10920 |
cttcctctcttccactgttcaggttcattttgttctcttcctctgtt |
10874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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