View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18156_low_48 (Length: 318)
Name: NF18156_low_48
Description: NF18156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18156_low_48 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 17 - 318
Target Start/End: Complemental strand, 33689606 - 33689301
Alignment:
| Q |
17 |
aggaacaagtgttacttttgttgagttaactattcaaatctttataaataactgatgcagtcaaagttaacagaaaagaggtaatgagacattgaagaag |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
|
|
| T |
33689606 |
aggaacaagtgttacttttgttgagttaactattcaaatctttataaataactgatgcagtcaaagttaacagaaaaaaggtaatgagacattgaaaaag |
33689507 |
T |
|
| Q |
117 |
agtcaacaaataattagtgataaatcttataacaacaatcaaataatagt----aaggtgcacaaagaaagaagaag--tatatatggtcaataatatgg |
210 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
33689506 |
agtcgacaaataattagtgataaatcttataacaacaatcaaataatagtaaagaaggtgcacaaagaaagaagaagtatatatatggtcaataatatgg |
33689407 |
T |
|
| Q |
211 |
tagaaaatttcaatcaagagatatgattatttttaagggtaattattgtgaagagtttggtcttctacatgttataaatgtacaaaactcttgaaagata |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
33689406 |
tagaaaatttcaatcaagagatatgattatttttaagggtaattattgtgaagagtttggtcttctacatgt--taaatgtacaaaactcttgaaagatt |
33689309 |
T |
|
| Q |
311 |
tatgaatt |
318 |
Q |
| |
|
|||||||| |
|
|
| T |
33689308 |
tatgaatt |
33689301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University