View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18156_low_5 (Length: 683)

Name: NF18156_low_5
Description: NF18156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18156_low_5
NF18156_low_5
[»] chr5 (13 HSPs)
chr5 (37-630)||(41889514-41890122)
chr5 (39-344)||(32267307-32267609)
chr5 (84-351)||(41901542-41901809)
chr5 (491-630)||(41903385-41903524)
chr5 (102-259)||(20478107-20478264)
chr5 (629-683)||(16544750-16544804)
chr5 (629-683)||(16546972-16547026)
chr5 (387-461)||(41901850-41901924)
chr5 (629-683)||(25078460-25078513)
chr5 (629-683)||(25136429-25136482)
chr5 (629-683)||(40380430-40380483)
chr5 (629-683)||(40382641-40382694)
chr5 (629-683)||(10593597-10593650)
[»] chr8 (13 HSPs)
chr8 (39-351)||(27922333-27922642)
chr8 (66-257)||(18315262-18315453)
chr8 (629-683)||(15290863-15290917)
chr8 (629-683)||(15471232-15471286)
chr8 (79-169)||(17636403-17636493)
chr8 (81-258)||(21235476-21235653)
chr8 (628-680)||(42575099-42575151)
chr8 (491-586)||(27921353-27921448)
chr8 (81-259)||(28246299-28246475)
chr8 (383-461)||(27922218-27922296)
chr8 (79-225)||(34936165-34936311)
chr8 (233-342)||(14002887-14002996)
chr8 (79-179)||(32151298-32151398)
[»] chr3 (18 HSPs)
chr3 (56-351)||(51113760-51114055)
chr3 (39-259)||(51764402-51764622)
chr3 (64-249)||(13470719-13470904)
chr3 (41-266)||(51120857-51121082)
chr3 (80-343)||(514731-514994)
chr3 (628-683)||(10211734-10211789)
chr3 (629-683)||(10209514-10209568)
chr3 (629-683)||(10056558-10056612)
chr3 (629-683)||(10058780-10058834)
chr3 (629-683)||(10061002-10061056)
chr3 (629-683)||(10063224-10063278)
chr3 (629-683)||(10065446-10065500)
chr3 (629-683)||(10067645-10067699)
chr3 (629-683)||(25637769-25637822)
chr3 (81-196)||(1657231-1657346)
chr3 (629-683)||(4598299-4598352)
chr3 (629-683)||(4600520-4600573)
chr3 (627-680)||(3617792-3617844)
[»] chr4 (33 HSPs)
chr4 (39-351)||(546738-547050)
chr4 (39-343)||(553312-553616)
chr4 (56-344)||(55505087-55505372)
chr4 (78-258)||(7307778-7307958)
chr4 (100-343)||(640748-640991)
chr4 (629-683)||(5136405-5136459)
chr4 (629-683)||(5138630-5138684)
chr4 (79-257)||(8187093-8187271)
chr4 (81-344)||(1548428-1548691)
chr4 (56-255)||(55908707-55908906)
chr4 (79-259)||(1524488-1524665)
chr4 (629-683)||(8395943-8395996)
chr4 (81-258)||(570269-570446)
chr4 (39-351)||(7225845-7226157)
chr4 (56-259)||(644748-644950)
chr4 (629-683)||(8393734-8393787)
chr4 (39-255)||(53761734-53761947)
chr4 (78-152)||(1545797-1545871)
chr4 (629-683)||(7123022-7123075)
chr4 (79-145)||(12121459-12121525)
chr4 (79-271)||(8184032-8184224)
chr4 (79-142)||(1600453-1600516)
chr4 (628-683)||(7125241-7125295)
chr4 (79-145)||(1513409-1513475)
chr4 (202-344)||(1552895-1553037)
chr4 (58-143)||(532222-532307)
chr4 (199-344)||(6006159-6006304)
chr4 (79-255)||(1537769-1537945)
chr4 (195-246)||(1517614-1517665)
chr4 (79-129)||(1489363-1489413)
chr4 (305-351)||(7307685-7307731)
chr4 (79-128)||(1519144-1519193)
chr4 (154-254)||(370842-370942)
[»] chr6 (31 HSPs)
chr6 (91-259)||(14820610-14820778)
chr6 (91-259)||(14818299-14818467)
chr6 (39-259)||(6402777-6402997)
chr6 (39-259)||(7119074-7119294)
chr6 (39-259)||(7131552-7131772)
chr6 (629-683)||(33341878-33341932)
chr6 (39-260)||(6585199-6585420)
chr6 (64-260)||(6432077-6432273)
chr6 (629-683)||(13154254-13154308)
chr6 (629-683)||(13159110-13159164)
chr6 (39-257)||(19632358-19632576)
chr6 (64-255)||(6415887-6416078)
chr6 (64-259)||(6423134-6423329)
chr6 (79-266)||(6426421-6426608)
chr6 (102-255)||(10579761-10579915)
chr6 (81-259)||(11936279-11936457)
chr6 (81-259)||(11948259-11948437)
chr6 (56-259)||(6394781-6394984)
chr6 (629-683)||(34165197-34165251)
chr6 (131-260)||(6603256-6603385)
chr6 (39-179)||(6594568-6594708)
chr6 (628-683)||(6136078-6136132)
chr6 (629-683)||(6027585-6027638)
chr6 (39-257)||(7994144-7994362)
chr6 (64-249)||(6589310-6589495)
chr6 (64-236)||(6409946-6410118)
chr6 (39-145)||(6596890-6596996)
chr6 (629-683)||(25421645-25421698)
chr6 (81-127)||(12102315-12102361)
chr6 (629-683)||(34167419-34167472)
chr6 (81-169)||(9411362-9411450)
[»] chr1 (8 HSPs)
chr1 (79-171)||(52082586-52082678)
chr1 (110-251)||(7554413-7554554)
chr1 (79-177)||(52092776-52092874)
chr1 (56-164)||(19468478-19468586)
chr1 (56-228)||(43634858-43635025)
chr1 (104-348)||(9580897-9581143)
chr1 (307-348)||(43634025-43634066)
chr1 (629-683)||(44203971-44204024)
[»] scaffold0041 (1 HSPs)
scaffold0041 (104-259)||(39101-39256)
[»] chr2 (5 HSPs)
chr2 (58-255)||(1037645-1037842)
chr2 (83-255)||(45245091-45245263)
chr2 (629-683)||(13655805-13655858)
chr2 (629-683)||(12647162-12647215)
chr2 (79-161)||(32785774-32785856)
[»] scaffold0295 (1 HSPs)
scaffold0295 (56-255)||(603-802)
[»] chr7 (7 HSPs)
chr7 (39-259)||(15092113-15092333)
chr7 (629-683)||(18388536-18388589)
chr7 (629-683)||(18391972-18392025)
chr7 (629-683)||(6592116-6592169)
chr7 (629-683)||(6594334-6594387)
chr7 (629-683)||(32060098-32060151)
chr7 (629-683)||(1560441-1560494)
[»] scaffold0137 (1 HSPs)
scaffold0137 (629-683)||(6614-6667)
[»] scaffold0565 (1 HSPs)
scaffold0565 (629-683)||(2380-2433)


Alignment Details
Target: chr5 (Bit Score: 508; Significance: 0; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 37 - 630
Target Start/End: Original strand, 41889514 - 41890122
Alignment:
Q  37 atatttgaacttatccggatgttcaatagtgaagatacttgaaatgaactttaaagttcccaaattggaggtgttgaacttatcatatacaaaagttgac 136  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  41889514 atatttgaacttatccggatgttcaatagtgaagctacttgaaatgaactttaaagttcccaaattggaggtgttgaacttatcatatacaaaagttgat 41889613  T
Q  137 gatgaaacattttataagatctcaaagagttgttgcgggctttcgaaattgttacttaaaaattgttatgatgtcacaaagaagggagtgaatcatgtgg 236  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41889614 gatgaaacactttataagatctcaaagagttgttgcgggctttcgaaattgttacttaaaaattgttatgatgtcacaaagaagggagtgaatcatgtgg 41889713  T
Q  237 -------tagagaactgcacgcaactgagaatgatcagtttggatggttgtcataaagtaaatggtaatgttgtggcctcaatggtatcttcaaggccgt 329  Q
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  41889714 tagagattagagaactgcacgcaactgagaatgatcagtttggatggttgtcataaagtaaatggtaatgttgtggcctcaatggtatcttcaaggctgt 41889813  T
Q  330 cattgagaaagataatagctccgattcgttttttgtttaagtgacaaagataagaaatacttcttgcttcatggatgtcttgtttgctagctttcttaaa 429  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41889814 cattgagaaagataatagctccgattcg-tttttgtttaactgacaaagataagaaatacttcttgcttcatggatgtcttgtttgctagctttcttaaa 41889912  T
Q  430 gtg---------ttctgctaaagtttgagctttaaaatgtactcttaataagtgttccatcatcaacttgagattagtcctttagttgcatctttctatt 520  Q
    |||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  41889913 gtgttctgcagcttctgctaaagtttgagctttaaaatgtactcttaataagtgttccatcatcaacttgagattagtcctttagttgcatctttctctt 41890012  T
Q  521 gaaatcaatgagttgaatgaaatctaatggtgtaagttcacatgctgagtgaatttgagataacttagcagcagagaaatcacatcttttaataatggat 620  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||    
T  41890013 gaaatcaatgagttgtatgaaatctaatggtgtaagttcacatgctgagtgaatttgagataacttagcagcagagaaatcacatcttttaatcaaggat 41890112  T
Q  621 aatatatgtg 630  Q
    ||||||||||    
T  41890113 aatatatgtg 41890122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 39 - 344
Target Start/End: Complemental strand, 32267609 - 32267307
Alignment:
Q  39 atttgaacttatccggatgttcaatagtgaagatacttgaaatgaactttaaagttcccaaattggaggtgttgaacttatcatatacaaaagttgacga 138  Q
    ||||||||||||||   ||||||| ||||||   ||| |||||||||||| ||||||||||||||||||| |||||||| ||| | |||| |||||| ||    
T  32267609 atttgaacttatcccagtgttcaacagtgaa---actagaaatgaactttgaagttcccaaattggaggtattgaacttgtcacaaacaatagttgatga 32267513  T
Q  139 tgaaacattttataagatctcaaagagttgttgcgggctttcgaaattgttacttaaaaattgttatgatgtcacaaagaagggagtgaatcatgtggta 238  Q
    |||| || |||||| |||||||||||||||||| ||||||| |||||||| ||||||||||||| ||||| ||||||||||||||||||| ||||| |||    
T  32267512 tgaagcactttatatgatctcaaagagttgttgtgggcttttgaaattgtcacttaaaaattgtaatgatatcacaaagaagggagtgaagcatgtagta 32267413  T
Q  239 gagaactgcacgcaactgagaatgatcagtttggatggttgtcataaagtaaatggtaatgttgtggcctcaatggtatcttcaaggccgtcattgagaa 338  Q
    || |||||||||||||| |||| ||| | |||  |||||||||| || ||  ||| | || ||||  | || |||||||||||||||||||| |||||||    
T  32267412 gaaaactgcacgcaacttagaaagattaatttctatggttgtcagaaggtccatgctgattttgtttcttcgatggtatcttcaaggccgtcgttgagaa 32267313  T
Q  339 agataa 344  Q
    ||||||    
T  32267312 agataa 32267307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 84 - 351
Target Start/End: Original strand, 41901542 - 41901809
Alignment:
Q  84 actttaaagttcccaaattggaggtgttgaacttatcatatacaaaagttgacgatgaaacattttataagatctcaaagagttgttgcgggctttcgaa 183  Q
    ||||| ||||||||||| |||||||||||||||| ||||||||||||||||| |||||| || |||||| |||||||||||||||||| || |||| |||    
T  41901542 actttgaagttcccaaactggaggtgttgaacttgtcatatacaaaagttgatgatgaagcactttatatgatctcaaagagttgttgtggacttttgaa 41901641  T
Q  184 attgttacttaaaaattgttatgatgtcacaaagaagggagtgaatcatgtggtagagaactgcacgcaactgagaatgatcagtttggatggttgtcat 283  Q
    ||||| |||| || ||||| ||||||||||||||||||||||||| ||||||||||| ||||| |||||| |||||| ||| |||||| ||||||||  |    
T  41901642 attgtcacttcaagattgtaatgatgtcacaaagaagggagtgaagcatgtggtagaaaactgtacgcaattgagaaagattagtttgaatggttgtttt 41901741  T
Q  284 aaagtaaatggtaatgttgtggcctcaatggtatcttcaaggccgtcattgagaaagataatagctcc 351  Q
    |||||| ||| |||||||||  | |  ||||||| |||||| ||||| ||||||  ||||| ||||||    
T  41901742 aaagtacatgctaatgttgtttctttgatggtattttcaagaccgtcgttgagacggataagagctcc 41901809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 491 - 630
Target Start/End: Original strand, 41903385 - 41903524
Alignment:
Q  491 agattagtcctttagttgcatctttctattgaaatcaatgagttgaatgaaatctaatggtgtaagttcacatgctgagtgaatttgagataacttagca 590  Q
    |||||| |||| | ||| || |||||| |||||||||  || |||  |||| ||||||||| ||||||||||||||| |||||| || | |||| |||||    
T  41903385 agattaatcctctggttacacctttctcttgaaatcatagatttgtgtgaagtctaatggtttaagttcacatgctgcgtgaatgtgcgttaacgtagca 41903484  T
Q  591 gcagagaaatcacatcttttaataatggataatatatgtg 630  Q
    |||||||||||| ||||||| || | ||||||||||||||    
T  41903485 gcagagaaatcatatcttttgattaaggataatatatgtg 41903524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 102 - 259
Target Start/End: Original strand, 20478107 - 20478264
Alignment:
Q  102 tggaggtgttgaacttatcatatacaaaagttgacgatgaaacattttataagatctcaaagagttgttgcgggctttcgaaattgttacttaaaaattg 201  Q
    |||||||||||||||| ||||||||||| ||||| || |||||||| | |  |||||||| || |||||| ||||||| | || |  |||| ||||||||    
T  20478107 tggaggtgttgaacttgtcatatacaaatgttgatgacgaaacattatctgtgatctcaaggaattgttgtgggcttttgcaaatactactgaaaaattg 20478206  T
Q  202 ttatgatgtcacaaagaagggagtgaatcatgtggtagagaactgcacgcaactgaga 259  Q
      || ||||||||| ||| |||| ||| ||||| ||||| |||||||| |||||||||    
T  20478207 cgataatgtcacaatgaaaggagcgaaacatgtcgtagaaaactgcacacaactgaga 20478264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 629 - 683
Target Start/End: Complemental strand, 16544804 - 16544750
Alignment:
Q  629 tgttgtgaatccccggacctccaagacccggatcgaaccacaccaatacaaagaa 683  Q
    |||||||||||||||  ||||||||  ||||||||||||||||||||||||||||    
T  16544804 tgttgtgaatccccgagcctccaaggaccggatcgaaccacaccaatacaaagaa 16544750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 629 - 683
Target Start/End: Complemental strand, 16547026 - 16546972
Alignment:
Q  629 tgttgtgaatccccggacctccaagacccggatcgaaccacaccaatacaaagaa 683  Q
    |||||||||||||||  ||||||||  ||||||||||||||||||||||||||||    
T  16547026 tgttgtgaatccccgagcctccaaggaccggatcgaaccacaccaatacaaagaa 16546972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 387 - 461
Target Start/End: Original strand, 41901850 - 41901924
Alignment:
Q  387 tacttcttgcttcatggatgtcttgtttgctagctttcttaaagtgttctgctaaagtttgagctttaaaatgta 461  Q
    |||||||||| ||||||||| |||||| |||||| ||||| |||| ||||||| ||||||||||| | |||||||    
T  41901850 tacttcttgcgtcatggatgccttgttcgctagcattcttgaagtcttctgctgaagtttgagctctgaaatgta 41901924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 629 - 683
Target Start/End: Complemental strand, 25078513 - 25078460
Alignment:
Q  629 tgttgtgaatccccggacctccaagacccggatcgaaccacaccaatacaaagaa 683  Q
    ||||||||||||||  ||||||||| || ||||||||||||||||||||||||||    
T  25078513 tgttgtgaatccccaaacctccaaggcc-ggatcgaaccacaccaatacaaagaa 25078460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 629 - 683
Target Start/End: Complemental strand, 25136482 - 25136429
Alignment:
Q  629 tgttgtgaatccccggacctccaagacccggatcgaaccacaccaatacaaagaa 683  Q
    ||||||||||||||  ||||||||| || ||||||||||||||||||||||||||    
T  25136482 tgttgtgaatccccaaacctccaaggcc-ggatcgaaccacaccaatacaaagaa 25136429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 629 - 683
Target Start/End: Complemental strand, 40380483 - 40380430
Alignment:
Q  629 tgttgtgaatccccggacctccaagacccggatcgaaccacaccaatacaaagaa 683  Q
    |||||||||||||||  |||||||| || ||||||||||||||||||||||||||    
T  40380483 tgttgtgaatccccgagcctccaaggcc-ggatcgaaccacaccaatacaaagaa 40380430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 629 - 683
Target Start/End: Complemental strand, 40382694 - 40382641
Alignment:
Q  629 tgttgtgaatccccggacctccaagacccggatcgaaccacaccaatacaaagaa 683  Q
    |||||||||||||||  |||||||| || ||||||||||||||||||||||||||    
T  40382694 tgttgtgaatccccgagcctccaaggcc-ggatcgaaccacaccaatacaaagaa 40382641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 629 - 683
Target Start/End: Complemental strand, 10593650 - 10593597
Alignment:
Q  629 tgttgtgaatccccggacctccaagacccggatcgaaccacaccaatacaaagaa 683  Q
    ||||||| ||||||| | |||||||| | ||||||||||||||||||||||||||    
T  10593650 tgttgtgtatccccgtatctccaagatc-ggatcgaaccacaccaatacaaagaa 10593597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 163; Significance: 1e-86; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 39 - 351
Target Start/End: Complemental strand, 27922642 - 27922333
Alignment:
Q  39 atttgaacttatccggatgttcaatagtgaagatacttgaaatgaactttaaagttcccaaattggaggtgttgaacttatcatatacaaaagttgacga 138  Q
    ||||||||||||||   |||||||| |||||   ||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||| ||    
T  27922642 atttgaacttatccaagtgttcaatggtgaa---actagaaatgaactttgaagttcccaaattggaggtgttgaacttgtcatatacaaatgttgatga 27922546  T
Q  139 tgaaacattttataagatctcaaagagttgttgcgggctttcgaaattgttacttaaaaattgttatgatgtcacaaagaagggagtgaatcatgtggta 238  Q
    |||| || |||||| |||||||||||||||||| ||||||| |||||||| |||| |||||||| ||||| ||||||||||||||||||| |||||||||    
T  27922545 tgaagcactttatatgatctcaaagagttgttgtgggcttttgaaattgtcacttgaaaattgtaatgatttcacaaagaagggagtgaaccatgtggta 27922446  T
Q  239 gagaactgcacgcaactgagaatgatcagtttggatggttgtcataaagtaaatggtaatgttgtggcctcaatggtatcttcaaggccgtcattgagaa 338  Q
    || |||||||| |||||||||| ||| |||||||||||||||||||||||| ||| |||| ||||  | || ||||||||||||||||| || ||||||     
T  27922445 gaaaactgcactcaactgagaaagattagtttggatggttgtcataaagtacatgctaatattgtttcttcgatggtatcttcaaggccatcgttgagac 27922346  T
Q  339 agataatagctcc 351  Q
    |||||| ||||||    
T  27922345 agataacagctcc 27922333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 66 - 257
Target Start/End: Original strand, 18315262 - 18315453
Alignment:
Q  66 tgaagatacttgaaatgaactttaaagttcccaaattggaggtgttgaacttatcatatacaaaagttgacgatgaaacattttataagatctcaaagag 165  Q
    ||||| ||| || |||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||| |||||| || | |||  ||||||||||||    
T  18315262 tgaagctacgtggaatgaactttaaagttcccaaactggaggtgttgaacttgtcacatacaaaagttgatgatgaagcactctatgtgatctcaaagag 18315361  T
Q  166 ttgttgcgggctttcgaaattgttacttaaaaattgttatgatgtcacaaagaagggagtgaatcatgtggtagagaactgcacgcaactga 257  Q
    |||| |  |||||| | || ||||| |  ||   |||| |||||||||| |||| ||||  ||  |||||||||| |||||||| |||||||    
T  18315362 ttgtcgtaggcttttgcaactgttattggaacgctgttgtgatgtcacagagaaaggagaaaagtatgtggtagaaaactgcacacaactga 18315453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 629 - 683
Target Start/End: Complemental strand, 15290917 - 15290863
Alignment:
Q  629 tgttgtgaatccccggacctccaagacccggatcgaaccacaccaatacaaagaa 683  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15290917 tgttgtgaatccccggacctccaagacccggatcgaaccacaccaatacaaagaa 15290863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 629 - 683
Target Start/End: Complemental strand, 15471286 - 15471232
Alignment:
Q  629 tgttgtgaatccccggacctccaagacccggatcgaaccacaccaatacaaagaa 683  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15471286 tgttgtgaatccccggacctccaagacccggatcgaaccacaccaatacaaagaa 15471232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 79 - 169
Target Start/End: Original strand, 17636403 - 17636493
Alignment:
Q  79 aatgaactttaaagttcccaaattggaggtgttgaacttatcatatacaaaagttgacgatgaaacattttataagatctcaaagagttgt 169  Q
    |||||||||| |||||||||||||||||||||||||||| ||| | |||  ||||||||||||| |||| |||  ||||||||||||||||    
T  17636403 aatgaactttgaagttcccaaattggaggtgttgaacttgtcacaaacaggagttgacgatgaagcattgtatgtgatctcaaagagttgt 17636493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 81 - 258
Target Start/End: Complemental strand, 21235653 - 21235476
Alignment:
Q  81 tgaactttaaagttcccaaattggaggtgttgaacttatcatatacaaaagttgacgatgaaacattttataagatctcaaagagttgttgcgggctttc 180  Q
    |||||||| ||||||||||| |||||||||||||||| |||||||||  ||||||  | |||  | | |||  ||| |||||||| ||| || ||||||     
T  21235653 tgaactttgaagttcccaaactggaggtgttgaacttgtcatatacaggagttgataacgaagaactctatttgatttcaaagagctgtcgcaggctttt 21235554  T
Q  181 gaaattgttacttaaaaattgttatgatgtcacaaagaagggagtgaatcatgtggtagagaactgcacgcaactgag 258  Q
    | || |||||||| |  |||||||| ||||||| || |  || ||||||||||||||||| |||||||| ||||||||    
T  21235553 gcaactgttacttgagcattgttattatgtcactaaaagaggcgtgaatcatgtggtagaaaactgcacacaactgag 21235476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 628 - 680
Target Start/End: Original strand, 42575099 - 42575151
Alignment:
Q  628 gtgttgtgaatccccggacctccaagacccggatcgaaccacaccaatacaaa 680  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  42575099 gtgttgtgaatccccgagcctccaagacccggatcgaaccacaccaatacaaa 42575151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 491 - 586
Target Start/End: Complemental strand, 27921448 - 27921353
Alignment:
Q  491 agattagtcctttagttgcatctttctattgaaatcaatgagttgaatgaaatctaatggtgtaagttcacatgctgagtgaatttgagataactt 586  Q
    |||||| || ||||||| || |||||| ||||||||| ||| |||  ||||||||||| |||||||||||||| ||| |||||| || ||||||||    
T  27921448 agattaatcatttagttacaactttctcttgaaatcagtgatttgtgtgaaatctaatcgtgtaagttcacatactgtgtgaatgtgcgataactt 27921353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 81 - 259
Target Start/End: Original strand, 28246299 - 28246475
Alignment:
Q  81 tgaactttaaagttcccaaattggaggtgttgaacttatcatatacaaaagttgacgatgaaacattttataagatctcaaagagttgttgcgggctttc 180  Q
    |||||||| ||||||||||| ||||||||||| |||| |||| ||||| ||||||  || || || | |||  |||||||||||||||| |||||||||     
T  28246299 tgaactttgaagttcccaaactggaggtgttggacttgtcatttacaagagttga--ataaatcactctattggatctcaaagagttgtagcgggctttt 28246396  T
Q  181 gaaattgttacttaaaaattgttatgatgtcacaaagaagggagtgaatcatgtggtagagaactgcacgcaactgaga 259  Q
    | || ||| |||||||  |||| | | ||||||| | ||  ||||||  |||||||| || || ||||| |||||||||    
T  28246397 gcaactgtcacttaaattttgtgaaggtgtcacagacaaatgagtgacgcatgtggttgaaaaatgcacacaactgaga 28246475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 383 - 461
Target Start/End: Complemental strand, 27922296 - 27922218
Alignment:
Q  383 gaaatacttcttgcttcatggatgtcttgtttgctagctttcttaaagtgttctgctaaagtttgagctttaaaatgta 461  Q
    |||||||||||||| ||| ||||| ||||||||||||| || || |||| ||||||| ||||||||||| | |||||||    
T  27922296 gaaatacttcttgcgtcaaggatgccttgtttgctagcattgttgaagtcttctgctgaagtttgagctctgaaatgta 27922218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 79 - 225
Target Start/End: Original strand, 34936165 - 34936311
Alignment:
Q  79 aatgaactttaaagttcccaaattggaggtgttgaacttatcatatacaaaagttgacgatgaaacattttataagatctcaaagagttgttgcgggctt 178  Q
    ||||| |||| | ||||| ||| | ||||||||| |||| |||||||||| |||||| ||| ||||| | |||   ||| ||||||||||| | ||||||    
T  34936165 aatgatctttgatgttccaaaactagaggtgttggacttgtcatatacaagagttgatgataaaacactctatgccatcgcaaagagttgtcgtgggctt 34936264  T
Q  179 tcgaaattgttacttaaaaattgttatgatgtcacaaagaagggagt 225  Q
    | | || | |||||| ||||||||| |||||||||  ||||||||||    
T  34936265 ttgcaactattacttcaaaattgttgtgatgtcacggagaagggagt 34936311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 342
Target Start/End: Complemental strand, 14002996 - 14002887
Alignment:
Q  233 gtggtagagaactgcacgcaactgagaatgatcagtttggatggttgtcataaagtaaatggtaatgttgtggcctcaatggtatcttcaaggccgtcat 332  Q
    |||||| | |||||||||||||| |||  ||| |||||| |||| |||| ||| ||  | | ||| ||||| ||||| ||||||  ||||||||| ||||    
T  14002996 gtggtaaacaactgcacgcaactcagagagataagtttgaatggctgtcctaatgtgcaagctaaagttgttgcctccatggtagtttcaaggccatcat 14002897  T
Q  333 tgagaaagat 342  Q
    ||||||||||    
T  14002896 tgagaaagat 14002887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 79 - 179
Target Start/End: Complemental strand, 32151398 - 32151298
Alignment:
Q  79 aatgaactttaaagttcccaaattggaggtgttgaacttatcatatacaaaagttgacgatgaaacattttataagatctcaaagagttgttgcgggctt 178  Q
    |||||||||  ||||| ||||  |||||||||| ||||| |||| |||||   |||| ||||||||| | |||  |||||||||||||||| | ||||||    
T  32151398 aatgaacttcgaagtttccaatctggaggtgttaaacttgtcatgtacaaggtttgatgatgaaacactctatgtgatctcaaagagttgtagtgggctt 32151299  T
Q  179 t 179  Q
    |    
T  32151298 t 32151298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 1e-39; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 56 - 351
Target Start/End: Original strand, 51113760 - 51114055
Alignment:
Q  56 tgttcaatagtgaagatacttgaaatgaactttaaagttcccaaattggaggtgttgaacttatcatatacaaaagttgacgatgaaacattttataaga 155  Q
    ||||||| | ||||| |||||| |||||||||| ||| ||||||| ||||||||||  |||| ||| ||||||  ||||| ||||||||| | |||  ||    
T  51113760 tgttcaaaactgaagctacttggaatgaactttgaagctcccaaactggaggtgttagacttgtcaaatacaatggttgatgatgaaacactctatgtga 51113859  T
Q  156 tctcaaagagttgttgcgggctttcgaaattgttacttaaaaattgttatgatgtcacaaagaagggagtgaatcatgtggtagagaactgcacgcaact 255  Q
    |||| ||||||||||| ||||||| | || ||||||| |||||||||||  |||||||| ||||||||||||| ||||||||||| || |||||  ||||    
T  51113860 tctcgaagagttgttgtgggcttttgcaactgttactgaaaaattgttaccatgtcacagagaagggagtgaagcatgtggtagaaaaatgcacaaaact 51113959  T
Q  256 gagaatgatcagtttggatggttgtcataaagtaaatggtaatgttgtggcctcaatggtatcttcaaggccgtcattgagaaagataatagctcc 351  Q
     |||  ||| | |||  | ||||||  ||||||  ||| |||| |||| ||||||||| ||| ||||||||| ||||||||| | |||| ||||||    
T  51113960 aagagagattaatttaaagggttgttttaaagtgcatgctaattttgttgcctcaatgatattttcaaggccatcattgagagaaataacagctcc 51114055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 39 - 259
Target Start/End: Original strand, 51764402 - 51764622
Alignment:
Q  39 atttgaacttatccggatgttcaatagtgaagatacttgaaatgaactttaaagttcccaaattggaggtgttgaacttatcatatacaaaagttgacga 138  Q
    |||||||| |||||| |||||||| ||||||| |||||| ||||||||||  |||||| ||  ||||||||||  |||| |||| |||||||||||| ||    
T  51764402 atttgaacctatccgaatgttcaagagtgaagctacttggaatgaactttgcagttccgaagctggaggtgttagacttgtcatttacaaaagttgatga 51764501  T
Q  139 tgaaacattttataagatctcaaagagttgttgcgggctttcgaaattgttacttaaaaattgttatgatgtcacaaagaagggagtgaatcatgtggta 238  Q
    | ||||| | |||  ||||||||||| |||||||||||||| | || | |||||  || ||||| || ||||||   ||||||||||||| ||||||||     
T  51764502 taaaacactctatgcgatctcaaagaattgttgcgggcttttgcaactattactggaacattgtgataatgtcaaggagaagggagtgaaacatgtggtt 51764601  T
Q  239 gagaactgcacgcaactgaga 259  Q
    || |||||||| ||| |||||    
T  51764602 gaaaactgcacacaattgaga 51764622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 64 - 249
Target Start/End: Original strand, 13470719 - 13470904
Alignment:
Q  64 agtgaagatacttgaaatgaactttaaagttcccaaattggaggtgttgaacttatcatatacaaaagttgacgatgaaacattttataagatctcaaag 163  Q
    ||||||| |||||| ||||||||||   ||||||||  |||||||||||||||| ||| ||||||| ||| | ||| ||||| | |||| ||||||||||    
T  13470719 agtgaagctacttggaatgaactttgttgttcccaatctggaggtgttgaacttgtcaaatacaaaggttaatgataaaacactctatatgatctcaaag 13470818  T
Q  164 agttgttgcgggctttcgaaattgttacttaaaaattgttatgatgtcacaaagaagggagtgaatcatgtggtagagaactgcac 249  Q
    | |||||| ||||||| | || | |||||| ||  |||| || |||||||| |  |||||||||| ||||||||||||||||||||    
T  13470819 aattgttgtgggcttttgcaactattacttgaactttgtcataatgtcacagaagagggagtgaaacatgtggtagagaactgcac 13470904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 41 - 266
Target Start/End: Original strand, 51120857 - 51121082
Alignment:
Q  41 ttgaacttatccggatgttcaatagtgaagatacttgaaatgaactttaaagttcccaaattggaggtgttgaacttatcatatacaaaagttgacgatg 140  Q
    ||||||||  |||| ||||||| ||||||  | | || |||||||||| |||||| ||||||||||||||||||||| ||  |||||| |||||| ||||    
T  51120857 ttgaacttcaccggttgttcaagagtgaaactgcatggaatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatg 51120956  T
Q  141 aaacattttataagatctcaaagagttgttgcgggctttcgaaattgttacttaaaaattgttatgatgtcacaaagaagggagtgaatcatgtggtaga 240  Q
    ||| | | |||   ||||||||||||||| | ||||||| | ||||||  ||  |||  ||||   |||||||| | || |||||||| |||||||||||    
T  51120957 aaaaactatatgtaatctcaaagagttgtcgtgggcttttgcaattgtctctagaaagctgtttgtatgtcacacaaaaaggagtgaaacatgtggtaga 51121056  T
Q  241 gaactgcacgcaactgagaatgatca 266  Q
     |||||||| ||| ||||| ||||||    
T  51121057 aaactgcacacaattgagagtgatca 51121082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 80 - 343
Target Start/End: Original strand, 514731 - 514994
Alignment:
Q  80 atgaactttaaagttcccaaattggaggtgttgaacttatcatatacaaaagttgacgatgaaacattttataagatctcaaagagttgttgcgggcttt 179  Q
    |||||| ||| ||||| |||| | |||||||||| ||||  | |||||| ||| ||||||||| || || ||  |||||| |||||||| || |||||||    
T  514731 atgaacattagagttctcaaacttgaggtgttgagcttaatagatacaagagtcgacgatgaagcacttcatgtgatctcgaagagttgctgtgggcttt 514830  T
Q  180 cgaaattgttacttaaaaattgttatgatgtcacaaagaagggagtgaatcatgtggtagagaactgcacgcaactgagaatgatcagtttggatggttg 279  Q
     | || | |||||  |||||||| | | | ||||| ||| ||||||||| ||||||||  | |||||||| | |||||||  ||||| |||    |||||    
T  514831 tgcaactattactgcaaaattgtgaaggtatcacagagacgggagtgaagcatgtggtgaaaaactgcacacgactgagagagatcaatttaagaggttg 514930  T
Q  280 tcataaagtaaatggtaatgttgtggcctcaatggtatcttcaaggccgtcattgagaaagata 343  Q
    | |||||||  ||  ||||||||| ||| ||||||||| ||||||||| |||||||||||||||    
T  514931 taataaagtgcattataatgttgttgccccaatggtattttcaaggccatcattgagaaagata 514994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 628 - 683
Target Start/End: Complemental strand, 10211789 - 10211734
Alignment:
Q  628 gtgttgtgaatccccggacctccaagacccggatcgaaccacaccaatacaaagaa 683  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  10211789 gtgttgtgaatccccggacctccaagacccggatcgaaccacaccaatacagagaa 10211734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 629 - 683
Target Start/End: Complemental strand, 10209568 - 10209514
Alignment:
Q  629 tgttgtgaatccccggacctccaagacccggatcgaaccacaccaatacaaagaa 683  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  10209568 tgttgtgaatccccggacctccaagacccggatcgaaccacaccaatacagagaa 10209514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 629 - 683
Target Start/End: Complemental strand, 10056612 - 10056558
Alignment:
Q  629 tgttgtgaatccccggacctccaagacccggatcgaaccacaccaatacaaagaa 683  Q
    ||||||||||||||| |||||||||  ||||||||||||||||||||||||||||    
T  10056612 tgttgtgaatccccgaacctccaaggtccggatcgaaccacaccaatacaaagaa 10056558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 629 - 683
Target Start/End: Complemental strand, 10058834 - 10058780
Alignment:
Q  629 tgttgtgaatccccggacctccaagacccggatcgaaccacaccaatacaaagaa 683  Q
    ||||||||||||||| |||||||||  ||||||||||||||||||||||||||||    
T  10058834 tgttgtgaatccccgaacctccaaggtccggatcgaaccacaccaatacaaagaa 10058780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 629 - 683
Target Start/End: Complemental strand, 10061056 - 10061002
Alignment:
Q  629 tgttgtgaatccccggacctccaagacccggatcgaaccacaccaatacaaagaa 683  Q
    ||||||||||||||| |||||||||  ||||||||||||||||||||||||||||    
T  10061056 tgttgtgaatccccgaacctccaaggtccggatcgaaccacaccaatacaaagaa 10061002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 629 - 683
Target Start/End: Complemental strand, 10063278 - 10063224
Alignment:
Q  629 tgttgtgaatccccggacctccaagacccggatcgaaccacaccaatacaaagaa 683  Q
    ||||||||||||||| |||||||||  ||||||||||||||||||||||||||||    
T  10063278 tgttgtgaatccccgaacctccaaggtccggatcgaaccacaccaatacaaagaa 10063224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 629 - 683
Target Start/End: Complemental strand, 10065500 - 10065446
Alignment:
Q  629 tgttgtgaatccccggacctccaagacccggatcgaaccacaccaatacaaagaa 683  Q
    ||||||||||||||| |||||||||  ||||||||||||||||||||||||||||    
T  10065500 tgttgtgaatccccgaacctccaaggtccggatcgaaccacaccaatacaaagaa 10065446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 629 - 683
Target Start/End: Complemental strand, 10067699 - 10067645
Alignment:
Q  629 tgttgtgaatccccggacctccaagacccggatcgaaccacaccaatacaaagaa 683  Q
    ||||||||||||||| |||||||||  ||||||||||||||||||||||||||||    
T  10067699 tgttgtgaatccccgaacctccaaggtccggatcgaaccacaccaatacaaagaa 10067645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 629 - 683
Target Start/End: Complemental strand, 25637822 - 25637769
Alignment:
Q  629 tgttgtgaatccccggacctccaagacccggatcgaaccacaccaatacaaagaa 683  Q
    |||||||||||||||||||||||||  | ||||||||||||||||||||||||||    
T  25637822 tgttgtgaatccccggacctccaaggtc-ggatcgaaccacaccaatacaaagaa 25637769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 81 - 196
Target Start/End: Complemental strand, 1657346 - 1657231
Alignment:
Q  81 tgaactttaaagttcccaaattggaggtgttgaacttatcatatacaaaagttgacgatgaaacattttataagatctcaaagagttgttgcgggctttc 180  Q
    |||||||| ||||||||||| ||||||||||| |||| |||| ||||| ||||||| ||  | || | |||  |||||||||||||||  |||||||||     
T  1657346 tgaactttgaagttcccaaactggaggtgttggacttgtcatttacaagagttgacaatatatcactctattggatctcaaagagttgcagcgggctttt 1657247  T
Q  181 gaaattgttacttaaa 196  Q
    | || ||| |||||||    
T  1657246 gcaactgtcacttaaa 1657231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 629 - 683
Target Start/End: Original strand, 4598299 - 4598352
Alignment:
Q  629 tgttgtgaatccccggacctccaagacccggatcgaaccacaccaatacaaagaa 683  Q
    ||||||||||||||| |||||||||  | ||||||||||||||||||||||||||    
T  4598299 tgttgtgaatccccgaacctccaaggtc-ggatcgaaccacaccaatacaaagaa 4598352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 629 - 683
Target Start/End: Original strand, 4600520 - 4600573
Alignment:
Q  629 tgttgtgaatccccggacctccaagacccggatcgaaccacaccaatacaaagaa 683  Q
    ||||||||||||||| |||||||||  | ||||||||||||||||||||||||||    
T  4600520 tgttgtgaatccccgaacctccaaggtc-ggatcgaaccacaccaatacaaagaa 4600573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 627 - 680
Target Start/End: Complemental strand, 3617844 - 3617792
Alignment:
Q  627 tgtgttgtgaatccccggacctccaagacccggatcgaaccacaccaatacaaa 680  Q
    |||||||||||||||||  ||||||||  | |||||||||||||||||||||||    
T  3617844 tgtgttgtgaatccccgagcctccaaggtc-ggatcgaaccacaccaatacaaa 3617792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 2e-35; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 39 - 351
Target Start/End: Complemental strand, 547050 - 546738
Alignment:
Q  39 atttgaacttatccggatgttcaatagtgaagatacttgaaatgaactttaaagttcccaaattggaggtgttgaacttatcatatacaaaagttgacga 138  Q
    ||||||||||||||   |||| | |||||||  || ||| |||||||||| ||||||| |||||||||||| ||||||| |||  |||||  ||  | ||    
T  547050 atttgaacttatccaattgtttagtagtgaacctatttggaatgaactttgaagttcctaaattggaggtggtgaacttgtcacgtacaattgtcaatga 546951  T
Q  139 tgaaacattttataagatctcaaagagttgttgcgggctttcgaaattgttacttaaaaattgttatgatgtcacaaagaagggagtgaatcatgtggta 238  Q
    ||||||| | |||  |||||||||||||||||| ||||||| | ||||||||||  || | |||| | |||||||| ||||||||||||| |||||| ||    
T  546950 tgaaacactctatgtgatctcaaagagttgttgtgggcttttggaattgttactggaagaatgttttcatgtcacagagaagggagtgaaacatgtgcta 546851  T
Q  239 gagaactgcacgcaactgagaatgatcagtttggatggttgtcataaagtaaatggtaatgttgtggcctcaatggtatcttcaaggccgtcattgagaa 338  Q
    || ||||||||  |||| |||  ||||| |||    | |||| ||||||| |||| |||||  || || |||||| ||| || |||||| ||||||||||    
T  546850 gaaaactgcacaaaactaagagagatcaatttaagggcttgtaataaagtgaatgttaatgccgttgcttcaatgttatttttaaggccatcattgagaa 546751  T
Q  339 agataatagctcc 351  Q
    |||||||||||||    
T  546750 agataatagctcc 546738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 39 - 343
Target Start/End: Complemental strand, 553616 - 553312
Alignment:
Q  39 atttgaacttatccggatgttcaatagtgaagatacttgaaatgaactttaaagttcccaaattggaggtgttgaacttatcatatacaaaagttgacga 138  Q
    ||||||||||| || | ||||||| ||||||| ||| |  | ||||||||||||||| |||| |||||||||||||||| |||| ||||| |||||| ||    
T  553616 atttgaacttaacccgctgttcaagagtgaagttacgtacattgaactttaaagttctcaaactggaggtgttgaacttgtcatttacaagagttgatga 553517  T
Q  139 tgaaacattttataagatctcaaagagttgttgcgggctttcgaaattgttacttaaaaattgttatgatgtcacaaagaagggagtgaatcatgtggta 238  Q
    |||| || || ||  ||| |||||||||||||  ||||||| | || ||||  |     |||||  |||||||||| | || ||||||||||||||||||    
T  553516 tgaagcacttaatgtgatttcaaagagttgttctgggcttttgcaactgttgttgttttattgtagtgatgtcacagataaaggagtgaatcatgtggta 553417  T
Q  239 gagaactgcacgcaactgagaatgatcagtttggatggttgtcataaagtaaatggtaatgttgtggcctcaatggtatcttcaaggccgtcattgagaa 338  Q
    || |||||||| ||||| |||  ||||  |||||  |||||| |||||||  |||  |||||||| ||||||||||||  |||| || | ||||||||||    
T  553416 gaaaactgcacacaacttagagagatcgatttggggggttgtgataaagtgcatgcaaatgttgttgcctcaatggtacattcacggacatcattgagaa 553317  T
Q  339 agata 343  Q
    |||||    
T  553316 agata 553312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 56 - 344
Target Start/End: Original strand, 55505087 - 55505372
Alignment:
Q  56 tgttcaatagtgaagatacttgaaatgaactttaaagttcccaaattggaggtgttgaacttatcatatacaaaagttgacgatgaaacattttataaga 155  Q
    ||||||| ||||||  || ||| ||||||||||| ||| ||| || | |||||||||||||| ||||||||||| |||||||||| |||| |||||  ||    
T  55505087 tgttcaacagtgaacctaattggaatgaactttagagtcccccaactagaggtgttgaacttgtcatatacaaaggttgacgatggaacactttatgtga 55505186  T
Q  156 tctcaaagagttgttgcgggctttcgaaattgttacttaaaaattgttatgatgtcacaaagaagggagtgaatcatgtggtagagaactgcacgcaact 255  Q
     |||||||| |||| | || |||| | | |||||| | |||||| |    ||||||||| ||||||||||||| || ||| |||| |||||||| |||||    
T  55505187 cctcaaagaattgtcgtggacttttgcatttgttattgaaaaatagc---gatgtcacagagaagggagtgaaacacgtgttagaaaactgcacacaact 55505283  T
Q  256 gagaatgatcagtttggatggttgtcataaagtaaatggtaatgttgtggcctcaatggtatcttcaaggccgtcattgagaaagataa 344  Q
     |||  |||||  ||| | |||||| |||||||  ||  || |||||| | ||||||||||| ||||||||| ||||||||||||||||    
T  55505284 aagagagatcaacttgaacggttgtgataaagtgcatactagtgttgttgactcaatggtattttcaaggccatcattgagaaagataa 55505372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 78 - 258
Target Start/End: Complemental strand, 7307958 - 7307778
Alignment:
Q  78 aaatgaactttaaagttcccaaattggaggtgttgaacttatcatatacaaaagttgacgatgaaacattttataagatctcaaagagttgttgcgggct 177  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||| |||||| || |   || ||||||||||||||||||  ||||    
T  7307958 aaatgaactttaaagttcccaaattggaggtattgaacttgtcatatacagaagttgatgatgaagcactacgtatgatctcaaagagttgttgtaggct 7307859  T
Q  178 ttcgaaattgttacttaaaaattgttatgatgtcacaaagaagggagtgaatcatgtggtagagaactgcacgcaactgag 258  Q
    || | |  |||||||  ||  ||||| |  |||||| | ||  ||| |||| ||||||||||| |||||||||||||||||    
T  7307858 tttgcacctgttactggaaggttgttttattgtcacgatgactggattgaagcatgtggtagaaaactgcacgcaactgag 7307778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 100 - 343
Target Start/End: Complemental strand, 640991 - 640748
Alignment:
Q  100 attggaggtgttgaacttatcatatacaaaagttgacgatgaaacattttataagatctcaaagagttgttgcgggctttcgaaattgttacttaaaaat 199  Q
    |||||||||||||||||| ||| ||||||| ||||| ||||||||| | ||   || |||||||| |||  | || |||| | |  |||||||  || ||    
T  640991 attggaggtgttgaacttgtcagatacaaacgttgatgatgaaacactctacgtgacctcaaagaattgccgtggtcttttgcatctgttactggaagat 640892  T
Q  200 tgttatgatgtcacaaagaagggagtgaatcatgtggtagagaactgcacgcaactgagaatgatcagtttggatggttgtcataaagtaaatggtaatg 299  Q
    ||| || |||| ||||||||||||||||||||||||||||| |||||||   || | |||  | ||| |||  | |||||| ||||||| |||| |||||    
T  640891 tgtcattatgtaacaaagaagggagtgaatcatgtggtagaaaactgcaaagaattaagagaggtcaatttaaagggttgtaataaagtgaatgctaatg 640792  T
Q  300 ttgtggcctcaatggtatcttcaaggccgtcattgagaaagata 343  Q
    | || | ||||||||||| ||||||||| |||||||||||||||    
T  640791 tcgttgactcaatggtattttcaaggccatcattgagaaagata 640748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 629 - 683
Target Start/End: Complemental strand, 5136459 - 5136405
Alignment:
Q  629 tgttgtgaatccccggacctccaagacccggatcgaaccacaccaatacaaagaa 683  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5136459 tgttgtgaatccccggacctccaagacccggatcgaaccacaccaatacaaagaa 5136405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 629 - 683
Target Start/End: Complemental strand, 5138684 - 5138630
Alignment:
Q  629 tgttgtgaatccccggacctccaagacccggatcgaaccacaccaatacaaagaa 683  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5138684 tgttgtgaatccccggacctccaagacccggatcgaaccacaccaatacaaagaa 5138630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 79 - 257
Target Start/End: Original strand, 8187093 - 8187271
Alignment:
Q  79 aatgaactttaaagttcccaaattggaggtgttgaacttatcatatacaaaagttgacgatgaaacattttataagatctcaaagagttgttgcgggctt 178  Q
    |||||||||| || || ||||| |||||||||||||||| ||| |||||| |||||| ||| ||||| |||||   || |||||||||||||| ||||||    
T  8187093 aatgaactttgaaatttccaaactggaggtgttgaacttgtcacatacaagagttgatgataaaacactttatgcaatttcaaagagttgttgtgggctt 8187192  T
Q  179 tcgaaattgttacttaaaaattgttatgatgtcacaaagaagggagtgaatcatgtggtagagaactgcacgcaactga 257  Q
    | | | ||||||||  ||||||||  | | ||||||  |||||||||||   |||||||| | ||||||||||||||||    
T  8187193 ttgcagttgttactggaaaattgtcgtaacgtcacagggaagggagtgatggatgtggtaaaaaactgcacgcaactga 8187271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 81 - 344
Target Start/End: Original strand, 1548428 - 1548691
Alignment:
Q  81 tgaactttaaagttcccaaattggaggtgttgaacttatcatatacaaaagttgacgatgaaacattttataagatctcaaagagttgttgcgggctttc 180  Q
    |||||||| || |||||||| |||||||||||||||| ||| ||||||   |||| ||||||||| |  ||  |||||||||||||||||| |||||||     
T  1548428 tgaactttgaaattcccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgggctttt 1548527  T
Q  181 gaaattgttacttaaaaattgttatgatgtcacaaagaagggagtgaatcatgtggtagagaactgcacgcaactgagaatgatcagtttggatggttgt 280  Q
    | | |||||||  |||  |||| |  || ||||| ||||||||||||| ||| | | ||| |||||| |||||||||||   || | |||||| ||||||    
T  1548528 gcacttgttacaaaaacgttgtaaaaatatcacagagaagggagtgaaacatatagaagaaaactgctcgcaactgagagaaattaatttggaaggttgt 1548627  T
Q  281 cataaagtaaatggtaatgttgtggcctcaatggtatcttcaaggccgtcattgagaaagataa 344  Q
      | || |  ||| | ||||||| || ||| |||||| |||||| || ||||||||||||||||    
T  1548628 tttcaattgcatgatgatgttgtcgcttcattggtattttcaagaccatcattgagaaagataa 1548691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 56 - 255
Target Start/End: Original strand, 55908707 - 55908906
Alignment:
Q  56 tgttcaatagtgaagatacttgaaatgaactttaaagttcccaaattggaggtgttgaacttatcatatacaaaagttgacgatgaaacattttataaga 155  Q
    ||||||| ||||||  |||||  ||| ||||||||||||||  |||| |||||||| ||||| ||| |||||   ||||| ||||||||| | |||| ||    
T  55908707 tgttcaagagtgaaactacttagaataaactttaaagttcctgaattagaggtgtttaacttgtcacatacatgtgttgatgatgaaacactctatatga 55908806  T
Q  156 tctcaaagagttgttgcgggctttcgaaattgttacttaaaaattgttatgatgtcacaaagaagggagtgaatcatgtggtagagaactgcacgcaact 255  Q
    ||||||||| |||||| |||||||   || |||| ||  |||||||| |||| |||||| |||| || ||||| ||||| || || |||||||| |||||    
T  55908807 tctcaaagaattgttgtgggcttttacaactgtttctggaaaattgtgatgaagtcacagagaatggtgtgaaacatgtagtcgaaaactgcacacaact 55908906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 79 - 259
Target Start/End: Original strand, 1524488 - 1524665
Alignment:
Q  79 aatgaactttaaagttcccaaattggaggtgttgaacttatcatatacaaaagttgacgatgaaacattttataagatctcaaagagttgttgcgggctt 178  Q
    |||||||||| |||||||||| |||||||||||||| || |||  |||||  ||||| ||||||||| | |||| ||||||| |||||||| | ||||||    
T  1524488 aatgaactttgaagttcccaatttggaggtgttgaatttgtcacgtacaagtgttgatgatgaaacactctatatgatctcacagagttgtcgtgggctt 1524587  T
Q  179 tcgaaattgttacttaaaaattgttatgatgtcacaaagaagggagtgaatcatgtggtagagaactgcacgcaactgaga 259  Q
    | | || ||||| |    | |||||   |||||||| ||| |||||||||| ||||| |||| |||||||| |||||||||    
T  1524588 ttgcaactgttattgcgtagttgtt---atgtcacagagaggggagtgaattatgtgatagaaaactgcacacaactgaga 1524665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 629 - 683
Target Start/End: Complemental strand, 8395996 - 8395943
Alignment:
Q  629 tgttgtgaatccccggacctccaagacccggatcgaaccacaccaatacaaagaa 683  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  8395996 tgttgtgaatccccggacctccaagacc-ggatcgaaccacaccaatacaaagaa 8395943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 81 - 258
Target Start/End: Complemental strand, 570446 - 570269
Alignment:
Q  81 tgaactttaaagttcccaaattggaggtgttgaacttatcatatacaaaagttgacgatgaaacattttataagatctcaaagagttgttgcgggctttc 180  Q
    |||||||| |||||| |||| | |||||||||||||| |||||||||  ||||||  | |||  | | |||  ||| |||||||||||| |||||||||     
T  570446 tgaactttgaagttctcaaactcgaggtgttgaacttgtcatatacaggagttgataacgaagaactctatctgatttcaaagagttgtcgcgggctttt 570347  T
Q  181 gaaattgttacttaaaaattgttatgatgtcacaaagaagggagtgaatcatgtggtagagaactgcacgcaactgag 258  Q
    | || |||||||| |  |||||||| |||| || || |  || ||||||||||||||||| |||||||| ||||||||    
T  570346 gcaactgttacttgagcattgttattatgttactaaaagaggcgtgaatcatgtggtagaaaactgcacacaactgag 570269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 39 - 351
Target Start/End: Original strand, 7225845 - 7226157
Alignment:
Q  39 atttgaacttatccggatgttcaatagtgaagatacttgaaatgaactttaaagttcccaaattggaggtgttgaacttatcatatacaaaagttgacga 138  Q
    ||||||||||||||   ||| ||| ||||||| |||   | ||||||||| |||||| | |||||||||| |||||||| ||| |||||| |||||| ||    
T  7225845 atttgaacttatcctactgtccaagagtgaagctacgcaacatgaactttgaagttctcgaattggaggtcttgaacttgtcacatacaagagttgatga 7225944  T
Q  139 tgaaacattttataagatctcaaagagttgttgcgggctttcgaaattgttacttaaaaattgttatgatgtcacaaagaagggagtgaatcatgtggta 238  Q
      ||  | ||  |  ||| |||||||||||||| || |||| | || | |||||  ||| ||||| ||| |||||  |||||||| |||| || ||||||    
T  7225945 caaaggacttcgtgtgatatcaaagagttgttgtggacttttgcaactattactggaaagttgttttgaggtcaccgagaagggattgaagcacgtggta 7226044  T
Q  239 gagaactgcacgcaactgagaatgatcagtttggatggttgtcataaagtaaatggtaatgttgtggcctcaatggtatcttcaaggccgtcattgagaa 338  Q
    || ||||||| ||||||||||  ||||| |||| |    || | |  |||  | ||| || |||| ||||||||||| ||||||||||| ||||||||||    
T  7226045 gaaaactgcaagcaactgagagagatcaatttgaagaactgccgtggagtgcaaggtgatattgttgcctcaatggtttcttcaaggccatcattgagaa 7226144  T
Q  339 agataatagctcc 351  Q
    ||||||| |||||    
T  7226145 agataattgctcc 7226157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 56 - 259
Target Start/End: Complemental strand, 644950 - 644748
Alignment:
Q  56 tgttcaatagtgaagatacttgaaatgaactttaaagttcccaaattggaggtgttgaacttatcatatacaaaagttgacgatgaaacattttataaga 155  Q
    ||||||| | ||||| |||||  | |||||||| ||||||||||| ||||||||||  |||| |||| ||||| |||| ||||| || || |||||  ||    
T  644950 tgttcaagactgaagctacttacattgaactttgaagttcccaaactggaggtgttagacttgtcatttacaagagtttacgataaatca-tttatttga 644852  T
Q  156 tctcaaagagttgttgcgggctttcgaaattgttacttaaaaattgttatgatgtcacaaagaagggagtgaatcatgtggtagagaactgcacgcaact 255  Q
    |||||||||||||  ||||||||  | || ||| |||||||  |||| | | ||||||  |||| |||||||| |||||||| || || ||||| |||||    
T  644851 tctcaaagagttgcagcgggcttgtgcaactgtcacttaaattttgtgaaggtgtcacggagaaaggagtgaaacatgtggttgaaaaatgcacacaact 644752  T
Q  256 gaga 259  Q
    ||||    
T  644751 gaga 644748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 629 - 683
Target Start/End: Complemental strand, 8393787 - 8393734
Alignment:
Q  629 tgttgtgaatccccggacctccaagacccggatcgaaccacaccaatacaaagaa 683  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  8393787 tgttgtgaatccccggacctcaaagacc-ggatcgaaccacaccaatacaaagaa 8393734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 255
Target Start/End: Original strand, 53761734 - 53761947
Alignment:
Q  39 atttgaacttatccggatgttcaatagtgaagatacttgaaatgaactttaaagttcccaaattggaggtgttgaacttatcatatacaaaagttgacga 138  Q
    ||||||||||| |||  ||||||| ||||||| || ||| ||||||||||  |||||||||  | |||| ||||||||| |||| ||| |||||| ||||    
T  53761734 atttgaacttagccgagtgttcaagagtgaagctaattggaatgaactttgtagttcccaagctagaggcgttgaacttgtcatttacgaaagttaacga 53761833  T
Q  139 tgaaacattttataagatctcaaagagttgttgcgggctttcgaaattgttacttaaaaattgttatgatgtcacaaagaagggagtgaatcatgtggta 238  Q
    | ||||| | | |  |||||| |||| |||| | ||||||| | || | ||||| ||| ||||| || |||||||  | ||||||||||| ||||||| |    
T  53761834 taaaacactctgt--gatctcgaagaattgtcgtgggcttttgcaa-tattactgaaacattgtgataatgtcacggacaagggagtgaaacatgtggaa 53761930  T
Q  239 gagaactgcacgcaact 255  Q
    || |||||||| |||||    
T  53761931 gaaaactgcacacaact 53761947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 152
Target Start/End: Complemental strand, 1545871 - 1545797
Alignment:
Q  78 aaatgaactttaaagttcccaaattggaggtgttgaacttatcatatacaaaagttgacgatgaaacattttata 152  Q
    ||||||||||||||||||| ||| |||||||||||||||| |  | ||||| |||||| ||||||||| ||||||    
T  1545871 aaatgaactttaaagttcctaaactggaggtgttgaacttgttgtttacaagagttgatgatgaaacactttata 1545797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 629 - 683
Target Start/End: Complemental strand, 7123075 - 7123022
Alignment:
Q  629 tgttgtgaatccccggacctccaagacccggatcgaaccacaccaatacaaagaa 683  Q
    ||||||||||||||| ||||||||| || ||||||||||||||||||||||||||    
T  7123075 tgttgtgaatccccgaacctccaaggcc-ggatcgaaccacaccaatacaaagaa 7123022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 79 - 145
Target Start/End: Original strand, 12121459 - 12121525
Alignment:
Q  79 aatgaactttaaagttcccaaattggaggtgttgaacttatcatatacaaaagttgacgatgaaaca 145  Q
    |||||||||| ||||||||||| | || ||||||||||| ||||||||||| ||||| |||||||||    
T  12121459 aatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaaca 12121525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 79 - 271
Target Start/End: Original strand, 8184032 - 8184224
Alignment:
Q  79 aatgaactttaaagttcccaaattggaggtgttgaacttatcatatacaaaagttgacgatgaaacattttataagatctcaaagagttgttgcgggctt 178  Q
    |||||||||| ||||||| ||| | |||||||||||||| ||| |||||| |||||| |||  | || | |||   ||||||||||||||||| ||||||    
T  8184032 aatgaactttgaagttccgaaactagaggtgttgaacttgtcacatacaagagttgatgatatagcactctatgcaatctcaaagagttgttgtgggctt 8184131  T
Q  179 tcgaaattgttacttaaaaattgttatgatg-tcacaaagaagggagtgaatcatgtggtagagaactgcacgcaactgagaatgatcagtttg 271  Q
    | | || |||||||  |||||||| |  ||| ||||| |  |||||||||| |||||| |||| || ||||| ||||||| | |||||| ||||    
T  8184132 ttggaactgttactggaaaattgtga-aatgatcacagatgagggagtgaagcatgtgctagaaaattgcacacaactgaaagtgatcaatttg 8184224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 79 - 142
Target Start/End: Complemental strand, 1600516 - 1600453
Alignment:
Q  79 aatgaactttaaagttcccaaattggaggtgttgaacttatcatatacaaaagttgacgatgaa 142  Q
    |||||||||| ||||||  ||| |||||||||||||||| ||||||||||  ||||||||||||    
T  1600516 aatgaactttgaagttcttaaactggaggtgttgaacttgtcatatacaagggttgacgatgaa 1600453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 628 - 683
Target Start/End: Complemental strand, 7125295 - 7125241
Alignment:
Q  628 gtgttgtgaatccccggacctccaagacccggatcgaaccacaccaatacaaagaa 683  Q
    |||||||||||||||| ||||||||| || ||||||||||||||||||| ||||||    
T  7125295 gtgttgtgaatccccgaacctccaaggcc-ggatcgaaccacaccaatataaagaa 7125241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 145
Target Start/End: Original strand, 1513409 - 1513475
Alignment:
Q  79 aatgaactttaaagttcccaaattggaggtgttgaacttatcatatacaaaagttgacgatgaaaca 145  Q
    |||||||||| ||||||||||| | || ||||||||||| |||| |||||| ||||| |||||||||    
T  1513409 aatgaactttgaagttcccaaactagaagtgttgaacttgtcatttacaaatgttgatgatgaaaca 1513475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 202 - 344
Target Start/End: Original strand, 1552895 - 1553037
Alignment:
Q  202 ttatgatgtcacaaagaagggagtgaatcatgtggtagagaactgcacgcaactgagaatgatcagtttggatggttgtcataaagtaaatggtaatgtt 301  Q
    |||| |||||||  ||||||||||||| ||||| | ||| || |||  |||||| |||  ||||| |||| | ||||||| ||||||  ||  | |||||    
T  1552895 ttattatgtcaccgagaagggagtgaagcatgtcggagaaaattgcttgcaactaagagagatcaatttgaaaggttgtcttaaagtggatcatgatgtt 1552994  T
Q  302 gtggcctcaatggtatcttcaaggccgtcattgagaaagataa 344  Q
    || || ||| |||||| ||||||||| ||||||||||||||||    
T  1552995 gttgcttcattggtattttcaaggccatcattgagaaagataa 1553037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 143
Target Start/End: Complemental strand, 532307 - 532222
Alignment:
Q  58 ttcaatagtgaagatacttgaaatgaactttaaagttcccaaattggaggtgttgaacttatcatatacaaaagttgacgatgaaa 143  Q
    ||||| ||||||  |||||| |||||||||| |||| |||||  | |||||||||||||| |||||||||||  |||| |||||||    
T  532307 ttcaagagtgaatctacttggaatgaactttgaagtccccaagctagaggtgttgaacttgtcatatacaaacattgatgatgaaa 532222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 344
Target Start/End: Complemental strand, 6006304 - 6006159
Alignment:
Q  199 ttgttatgatgtcacaaagaagggagtgaatcatgtggtagagaactgcacgcaactgagaatgatcagtttggatggttgtcataaagtaaatggtaat 298  Q
    |||||||||||||||||||||||||||||  || || ||||| |||||||  ||| |||||  ||| | |||| | | ||||||||||||    | | ||    
T  6006304 ttgttatgatgtcacaaagaagggagtgatgcaagtcgtagaaaactgcaaacaattgagagagataaatttgcaggattgtcataaagtggtagctgat 6006205  T
Q  299 gttgtggcctcaatggtatcttcaaggccgtcattgagaaagataa 344  Q
    ||||| | ||  ||||||| | ||||||| ||||||||||||||||    
T  6006204 gttgttgacttgatggtatttacaaggccatcattgagaaagataa 6006159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 79 - 255
Target Start/End: Original strand, 1537769 - 1537945
Alignment:
Q  79 aatgaactttaaagttcccaaattggaggtgttgaacttatcatatacaaaagttgacgatgaaacattttataagatctcaaagagttgttgcgggctt 178  Q
    |||||||||| ||||||||||| | || ||||||||||| ||||||||||| ||| | ||  ||||| | | |   ||||||||| ||||| | ||||||    
T  1537769 aatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaatgacaaaacactgtgtgtaatctcaaagtgttgtcgtgggctt 1537868  T
Q  179 tcgaaattgttacttaaaaattgttatgatgtcacaaagaagggagtgaatcatgtggtagagaactgcacgcaact 255  Q
    | | || | |||||  ||  |||||||  ||||||| |||||||||||||  ||||| |||| || ||||| |||||    
T  1537869 ttgcaacttttactggaactttgttatcttgtcacacagaagggagtgaagtatgtgctagaaaaatgcactcaact 1537945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 246
Target Start/End: Original strand, 1517614 - 1517665
Alignment:
Q  195 aaaattgttatgatgtcacaaagaagggagtgaatcatgtggtagagaactg 246  Q
    |||||||| ||||||||||| |||||||||| |  |||||||||||||||||    
T  1517614 aaaattgtcatgatgtcacagagaagggagttaggcatgtggtagagaactg 1517665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 79 - 129
Target Start/End: Original strand, 1489363 - 1489413
Alignment:
Q  79 aatgaactttaaagttcccaaattggaggtgttgaacttatcatatacaaa 129  Q
    |||||||||| ||||||||||| | || ||||||||||| |||||||||||    
T  1489363 aatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaa 1489413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 305 - 351
Target Start/End: Complemental strand, 7307731 - 7307685
Alignment:
Q  305 gcctcaatggtatcttcaaggccgtcattgagaaagataatagctcc 351  Q
    |||| ||| |||||||||||||| ||||||||||||||||| |||||    
T  7307731 gccttaattgtatcttcaaggccatcattgagaaagataattgctcc 7307685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 128
Target Start/End: Original strand, 1519144 - 1519193
Alignment:
Q  79 aatgaactttaaagttcccaaattggaggtgttgaacttatcatatacaa 128  Q
    |||||||||| ||||||||||| | |||||||||||||| ||| ||||||    
T  1519144 aatgaactttgaagttcccaaactagaggtgttgaacttgtcacatacaa 1519193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 154 - 254
Target Start/End: Complemental strand, 370942 - 370842
Alignment:
Q  154 gatctcaaagagttgttgcgggctttcgaaattgttacttaaaaattgttatgatgtcacaaagaagggagtgaatcatgtggtagagaactgcacgcaa 253  Q
    ||||||||||||||||||  |||||| | || | |||||  |||||||| | | | ||||||||| ||||||||| ||||||||  | |||||||| |||    
T  370942 gatctcaaagagttgttgtcggcttttgcaactattactgcaaaattgtgaaggtatcacaaagatgggagtgaagcatgtggtgaaaaactgcacacaa 370843  T
Q  254 c 254  Q
    |    
T  370842 c 370842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 1e-30; HSPs: 31)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 91 - 259
Target Start/End: Complemental strand, 14820778 - 14820610
Alignment:
Q  91 agttcccaaattggaggtgttgaacttatcatatacaaaagttgacgatgaaacattttataagatctcaaagagttgttgcgggctttcgaaattgtta 190  Q
    ||||||||| || |||||||||||||||||| ||||||| |||||  |||||||| |||||| |||||| |||| |||||| ||||||| |  ||| |||    
T  14820778 agttcccaagttagaggtgttgaacttatcaaatacaaaggttgataatgaaacactttatatgatctccaagaattgttgtgggcttttgcgattatta 14820679  T
Q  191 cttaaaaattgttatgatgtcacaaagaagggagtgaatcatgtggtagagaactgcacgcaactgaga 259  Q
    ||| |||| ||| ||||||||||| ||||||| ||||| ||||||||| | |||||||| || ||||||    
T  14820678 cttgaaaaatgtaatgatgtcacagagaagggtgtgaaacatgtggtaaaaaactgcacacagctgaga 14820610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 91 - 259
Target Start/End: Complemental strand, 14818467 - 14818299
Alignment:
Q  91 agttcccaaattggaggtgttgaacttatcatatacaaaagttgacgatgaaacattttataagatctcaaagagttgttgcgggctttcgaaattgtta 190  Q
    ||||| ||| || |||||||||||||||||| ||||||| |||||  |||||||| |||||| |||||| |||| |||||  ||||||| |  ||| |||    
T  14818467 agttctcaagttagaggtgttgaacttatcaaatacaaaggttgataatgaaacactttatatgatctccaagaattgttctgggcttttgcgattatta 14818368  T
Q  191 cttaaaaattgttatgatgtcacaaagaagggagtgaatcatgtggtagagaactgcacgcaactgaga 259  Q
    ||| |||||||| || |||||||| ||||||| ||||| ||||| ||||| |||||||| || ||||||    
T  14818367 cttgaaaattgtaataatgtcacagagaagggtgtgaaacatgtagtagaaaactgcacacagctgaga 14818299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 39 - 259
Target Start/End: Complemental strand, 6402997 - 6402777
Alignment:
Q  39 atttgaacttatccggatgttcaatagtgaagatacttgaaatgaactttaaagttcccaaattggaggtgttgaacttatcatatacaaaagttgacga 138  Q
    ||||||||||| | || ||||||| ||||||| |||||| ||| ||||||  ||||||| || | || ||||||||||| ||| |||| || ||||| ||    
T  6402997 atttgaacttaactgggtgttcaagagtgaagctacttggaataaactttgcagttccccaactagaagtgttgaacttgtcagatacgaaggttgatga 6402898  T
Q  139 tgaaacattttataagatctcaaagagttgttgcgggctttcgaaattgttacttaaaaattgttatgatgtcacaaagaagggagtgaatcatgtggta 238  Q
    ||||||| | |||  ||||||||||| |||| | ||||||| |||| | ||| | | | |||||||| |||||||| | ||||||| ||| |||||| ||    
T  6402897 tgaaacactctatgtgatctcaaagaattgtagtgggcttttgaaactattattgagagattgttataatgtcacagaaaagggagcgaaacatgtgata 6402798  T
Q  239 gagaactgcacgcaactgaga 259  Q
    || ||||| || |||||||||    
T  6402797 gaaaactgtacacaactgaga 6402777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 39 - 259
Target Start/End: Complemental strand, 7119294 - 7119074
Alignment:
Q  39 atttgaacttatccggatgttcaatagtgaagatacttgaaatgaactttaaagttcccaaattggaggtgttgaacttatcatatacaaaagttgacga 138  Q
    ||||||||||| ||   ||||||| ||||||| |||||| ||||||||||   |||| | |  |||||||||||||||| ||| |||| || ||||| ||    
T  7119294 atttgaacttagcccactgttcaagagtgaagctacttggaatgaactttgttgttcaccagctggaggtgttgaacttgtcagatacgaaggttgatga 7119195  T
Q  139 tgaaacattttataagatctcaaagagttgttgcgggctttcgaaattgttacttaaaaattgttatgatgtcacaaagaagggagtgaatcatgtggta 238  Q
    ||||||| |  ||  |||||| |||| |||||||||||||| | || | ||||| ||| |||||||| |||||||||| || | |||||| ||||||| |    
T  7119194 tgaaacactccatgtgatctcgaagaattgttgcgggcttttggaactattactgaaagattgttattatgtcacaaaaaaagaagtgaaacatgtggaa 7119095  T
Q  239 gagaactgcacgcaactgaga 259  Q
    || |||||||| ||| |||||    
T  7119094 gaaaactgcacacaattgaga 7119074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 39 - 259
Target Start/End: Complemental strand, 7131772 - 7131552
Alignment:
Q  39 atttgaacttatccggatgttcaatagtgaagatacttgaaatgaactttaaagttcccaaattggaggtgttgaacttatcatatacaaaagttgacga 138  Q
    ||||||||||| ||   ||||||| ||||||| |||||| ||||||||||   |||| | |  |||||||||||||||| ||| |||| || ||||| ||    
T  7131772 atttgaacttagcccactgttcaagagtgaagctacttggaatgaactttgttgttcgccagctggaggtgttgaacttgtcagatacgaaggttgatga 7131673  T
Q  139 tgaaacattttataagatctcaaagagttgttgcgggctttcgaaattgttacttaaaaattgttatgatgtcacaaagaagggagtgaatcatgtggta 238  Q
    ||||||| |  ||  |||||| |||| |||||||||||||| | || | ||||| ||| |||||||| |||||||||| || | |||||| ||||||| |    
T  7131672 tgaaacactccatgtgatctcgaagaattgttgcgggcttttggaactattactgaaagattgttattatgtcacaaacaaagcagtgaaacatgtggaa 7131573  T
Q  239 gagaactgcacgcaactgaga 259  Q
    || |||||||| ||| |||||    
T  7131572 gaaaactgcacacaattgaga 7131552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 629 - 683
Target Start/End: Original strand, 33341878 - 33341932
Alignment:
Q  629 tgttgtgaatccccggacctccaagacccggatcgaaccacaccaatacaaagaa 683  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33341878 tgttgtgaatccccggacctccaagacccggatcgaaccacaccaatacaaagaa 33341932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 39 - 260
Target Start/End: Original strand, 6585199 - 6585420
Alignment:
Q  39 atttgaacttatccggatgttcaatagtgaagatacttgaaatgaactttaaagttcccaaattggaggtgttgaacttatcatatacaaaagttgacga 138  Q
    ||||||||||  | || ||||||| ||||||| |||||| ||| ||||||  |||| || | |||||||| |||||||| ||| ||||||| ||||| ||    
T  6585199 atttgaactttactgggtgttcaagagtgaagctacttggaataaactttttagttacccagttggaggtattgaacttgtcagatacaaaggttgatga 6585298  T
Q  139 tgaaacattttataagatctcaaagagttgttgcgggctttcgaaattgttacttaaaaattgttatgatgtcacaaagaagggagtgaatcatgtggta 238  Q
    ||||||| | |||  |||||||||||||||||  | ||||| | || | ||||| |||  |||| |  |||||||| |||||||| |||| |||||||||    
T  6585299 tgaaacactctatgtgatctcaaagagttgttctgcgcttttggaactattactgaaaggttgtgaaaatgtcacagagaagggactgaaacatgtggta 6585398  T
Q  239 gagaactgcacgcaactgagaa 260  Q
    || |  ||||| ||||||||||    
T  6585399 gaaatttgcacacaactgagaa 6585420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 64 - 260
Target Start/End: Complemental strand, 6432273 - 6432077
Alignment:
Q  64 agtgaagatacttgaaatgaactttaaagttcccaaattggaggtgttgaacttatcatatacaaaagttgacgatgaaacattttataagatctcaaag 163  Q
    ||||||| ||| || |||||||||| ||||||||||  || ||||||||||||| ||| ||||||  ||||| ||||||||| |||||  ||||| ||||    
T  6432273 agtgaagctacatggaatgaactttgaagttcccaagctgaaggtgttgaacttgtcaaatacaagcgttgatgatgaaacactttatgtgatcttaaag 6432174  T
Q  164 agttgttgcgggctttcgaaattgttacttaaaaattgttatgatgtcacaaagaagggagtgaatcatgtggtagagaactgcacgcaactgagaa 260  Q
    | |||||| ||||||  | || | || ||  | |||||| || |||||||| ||||||||||||| | ||||||||| || ||||| ||| ||||||    
T  6432173 aattgttgtgggcttctgcaactattcctgtacaattgtgataatgtcacacagaagggagtgaaacttgtggtagaaaaatgcacacaattgagaa 6432077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 629 - 683
Target Start/End: Complemental strand, 13154308 - 13154254
Alignment:
Q  629 tgttgtgaatccccggacctccaagacccggatcgaaccacaccaatacaaagaa 683  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  13154308 tgttgtgaatcctcggacctccaagacccggatcgaaccacaccaatacaaagaa 13154254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 629 - 683
Target Start/End: Complemental strand, 13159164 - 13159110
Alignment:
Q  629 tgttgtgaatccccggacctccaagacccggatcgaaccacaccaatacaaagaa 683  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  13159164 tgttgtgaatcctcggacctccaagacccggatcgaaccacaccaatacaaagaa 13159110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 39 - 257
Target Start/End: Complemental strand, 19632576 - 19632358
Alignment:
Q  39 atttgaacttatccggatgttcaatagtgaagatacttgaaatgaactttaaagttcccaaattggaggtgttgaacttatcatatacaaaagttgacga 138  Q
    ||||||||||| |  ||||||||||||| ||  |||||| ||| ||||||  |||||||||  | ||||||||| |||| || |||||||| ||||| ||    
T  19632576 atttgaacttaactcgatgttcaatagttaacctacttggaataaactttctagttcccaagctagaggtgttggacttgtcgtatacaaaggttgatga 19632477  T
Q  139 tgaaacattttataagatctcaaagagttgttgcgggctttcgaaattgttacttaaaaattgttatgatgtcacaaagaagggagtgaatcatgtggta 238  Q
    |||   | ||| |  ||||||||||| |||||| ||||||| | || | ||||| |||||||||  | || ||||| ||||||||||||| || ||||||    
T  19632476 tgagcaactttttgtgatctcaaagaattgttgtgggcttttgcaactcttactgaaaaattgtgctaatatcacagagaagggagtgaaacacgtggta 19632377  T
Q  239 gagaactgcacgcaactga 257  Q
    || |||||||  |||||||    
T  19632376 gaaaactgcaaacaactga 19632358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 64 - 255
Target Start/End: Complemental strand, 6416078 - 6415887
Alignment:
Q  64 agtgaagatacttgaaatgaactttaaagttcccaaattggaggtgttgaacttatcatatacaaaagttgacgatgaaacattttataagatctcaaag 163  Q
    ||||||| ||| || |||| |||||  |||||||||  |||||||||||||||| ||| ||||||| ||| | ||| ||||  | |||  ||||||||||    
T  6416078 agtgaagctacatggaatggactttgtagttcccaacctggaggtgttgaacttgtcaaatacaaaggttaatgataaaactctctatgtgatctcaaag 6415979  T
Q  164 agttgttgcgggctttcgaaattgttacttaaaaattgttatgatgtcacaaagaagggagtgaatcatgtggtagagaactgcacgcaact 255  Q
    | |||| ||||||||| | || | |||||| ||  |||| || |||||||| |   ||||||||| |||||||||||||||||||| |||||    
T  6415978 aattgtagcgggcttttgcaactattacttgaattttgtgataatgtcacagaagtgggagtgaaacatgtggtagagaactgcacacaact 6415887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 64 - 259
Target Start/End: Complemental strand, 6423329 - 6423134
Alignment:
Q  64 agtgaagatacttgaaatgaactttaaagttcccaaattggaggtgttgaacttatcatatacaaaagttgacgatgaaacattttataagatctcaaag 163  Q
    ||||||| ||| || |||||||||| ||||||||||  |||||||||||||||| ||| |||||| ||||  |||| ||||| | |||  ||||||||||    
T  6423329 agtgaagctacgtgcaatgaacttttaagttcccaagctggaggtgttgaacttgtcaaatacaagagttagcgataaaacactctatgcgatctcaaag 6423230  T
Q  164 agttgttgcgggctttcgaaattgttacttaaaaattgttatgatgtcacaaagaagggagtgaatcatgtggtagagaactgcacgcaactgaga 259  Q
    |||||||| ||| ||| | || | |||||| || ||||| || |||| ||||| || ||| |||| | |||||||   |||||||| ||| |||||    
T  6423229 agttgttgtgggattttgcaactattacttgaagattgtgattatgtaacaaacaaaggactgaaacgtgtggtattaaactgcacacaattgaga 6423134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 79 - 266
Target Start/End: Complemental strand, 6426608 - 6426421
Alignment:
Q  79 aatgaactttaaagttcccaaattggaggtgttgaacttatcatatacaaaagttgacgatgaaacattttataagatctcaaagagttgttgcgggctt 178  Q
    ||||||||||  ||||||| |  ||||||||||||| || ||| | ||||   |||| |||||||| ||||||  ||||||||||| ||||||  || ||    
T  6426608 aatgaactttgcagttcccgagctggaggtgttgaatttgtcaaacacaagcattgatgatgaaactttttatgcgatctcaaagaattgttgtcggatt 6426509  T
Q  179 tcgaaattgttacttaaaaattgttatgatgtcacaaagaagggagtgaatcatgtggtagagaactgcacgcaactgagaatgatca 266  Q
    | | |||| |||||| |||||||| | | |||||||| |||||| ||||| || |||||||| |||||||| ||||| |||| |||||    
T  6426508 ttgcaattattacttgaaaattgtaaaggtgtcacaatgaagggtgtgaaacaagtggtagaaaactgcacacaactaagaaagatca 6426421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 102 - 255
Target Start/End: Original strand, 10579761 - 10579915
Alignment:
Q  102 tggaggtgttgaacttatcatatacaaaagttgacgatgaaacattttataagatctcaaagagttgttg-cgggctttcgaaattgttacttaaaaatt 200  Q
    |||||||||||||||| ||||||||||||||||| ||| ||||| | |||  ||||||||||| |||||| |||  ||| ||| |  ||||| ||||| |    
T  10579761 tggaggtgttgaacttgtcatatacaaaagttgatgataaaacactctattcgatctcaaagaattgttgtcggcttttggaactatttactgaaaaact 10579860  T
Q  201 gttatgatgtcacaaagaagggagtgaatcatgtggtagagaactgcacgcaact 255  Q
    || |    ||||||||||||||||| || ||||||||||| |||||||| |||||    
T  10579861 gtaaaagggtcacaaagaagggagttaaacatgtggtagaaaactgcacacaact 10579915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 81 - 259
Target Start/End: Original strand, 11936279 - 11936457
Alignment:
Q  81 tgaactttaaagttcccaaattggaggtgttgaacttatcatatacaaaagttgacgatgaaacattttataagatctcaaagagttgttgcgggctttc 180  Q
    |||||||| ||||||||||| ||||||||||| |||| |||| ||||| |||||||||| || || | |||  |||||||||||||||| | |||||||     
T  11936279 tgaactttgaagttcccaaactggaggtgttggacttgtcatttacaagagttgacgataaatcactctattggatctcaaagagttgtagtgggctttt 11936378  T
Q  181 gaaattgttacttaaaaattgttatgatgtcacaaagaagggagtgaatcatgtggtagagaactgcacgcaactgaga 259  Q
    | || ||| |||||||  |||| | | ||||||| | || |||||||  |||||||| || || ||||| ||| |||||    
T  11936379 gcaactgtcacttaaattttgtgaaggtgtcacagacaaaggagtgacgcatgtggttgaaaaatgcacacaaatgaga 11936457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 81 - 259
Target Start/End: Original strand, 11948259 - 11948437
Alignment:
Q  81 tgaactttaaagttcccaaattggaggtgttgaacttatcatatacaaaagttgacgatgaaacattttataagatctcaaagagttgttgcgggctttc 180  Q
    |||||||| ||||||||||| ||||||||||| |||| |||| ||||| |||||||||| || || | |||  |||||||||||||||| | |||||||     
T  11948259 tgaactttgaagttcccaaactggaggtgttggacttgtcatttacaagagttgacgataaatcactctattggatctcaaagagttgtagtgggctttt 11948358  T
Q  181 gaaattgttacttaaaaattgttatgatgtcacaaagaagggagtgaatcatgtggtagagaactgcacgcaactgaga 259  Q
    | || ||| |||||||  |||| | | ||||||| | || |||||||  |||||||| || || ||||| ||| |||||    
T  11948359 gcaactgtcacttaaattttgtgaaggtgtcacagacaaaggagtgacgcatgtggttgaaaaatgcacacaaatgaga 11948437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 56 - 259
Target Start/End: Complemental strand, 6394984 - 6394781
Alignment:
Q  56 tgttcaatagtgaagatacttgaaatgaactttaaagttcccaaattggaggtgttgaacttatcatatacaaaagttgacgatgaaacattttataaga 155  Q
    ||||||| ||||||  ||| || ||||||||||  ||||||| |  |||||||||||||||| ||| ||||||  ||||| ||||||||  ||| |  ||    
T  6394984 tgttcaaaagtgaaactacatggaatgaactttgcagttcccgagctggaggtgttgaacttgtcaaatacaagcgttgatgatgaaactctttctgtga 6394885  T
Q  156 tctcaaagagttgttgcgggctttcgaaattgttacttaaaaattgttatgatgtcacaaagaagggagtgaatcatgtggtagagaactgcacgcaact 255  Q
    ||||||||| |||||| ||||||| | ||||   |||| | |||||| |  |||||||| | ||||| ||| | ||||||||||| |||||||| ||| |    
T  6394884 tctcaaagaattgttgtgggcttttgcaattacaacttgataattgtaaaaatgtcacagaaaagggtgtggaacatgtggtagaaaactgcacacaatt 6394785  T
Q  256 gaga 259  Q
    ||||    
T  6394784 gaga 6394781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 629 - 683
Target Start/End: Complemental strand, 34165251 - 34165197
Alignment:
Q  629 tgttgtgaatccccggacctccaagacccggatcgaaccacaccaatacaaagaa 683  Q
    ||||||||||||||| |||||||||  ||||||||||||||||||||||||||||    
T  34165251 tgttgtgaatccccgaacctccaaggtccggatcgaaccacaccaatacaaagaa 34165197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 260
Target Start/End: Original strand, 6603256 - 6603385
Alignment:
Q  131 gttgacgatgaaacattttataagatctcaaagagttgttgcgggctttcgaaattgttacttaaaaattgttatgatgtcacaaagaagggagtgaatc 230  Q
    ||||| ||||||||| | |||  ||||||||||||||||   ||||||| | || | ||| | ||| |||||||| |||||||| |||| |||||||| |    
T  6603256 gttgatgatgaaacagtctatgcgatctcaaagagttgtcctgggcttttggaactattattgaaatattgttattatgtcacagagaaaggagtgaaac 6603355  T
Q  231 atgtggtagagaactgcacgcaactgagaa 260  Q
    |||||||||| |||||||  ||||||||||    
T  6603356 atgtggtagaaaactgcaaacaactgagaa 6603385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 39 - 179
Target Start/End: Original strand, 6594568 - 6594708
Alignment:
Q  39 atttgaacttatccggatgttcaatagtgaagatacttgaaatgaactttaaagttcccaaattggaggtgttgaacttatcatatacaaaagttgacga 138  Q
    ||||| |||||||||| ||||||| ||||||| ||| || ||| ||||||  |||||||||| ||||||||||| |||| ||| ||||| | ||||| ||    
T  6594568 atttgtacttatccgggtgttcaagagtgaagctacatggaataaactttttagttcccaaactggaggtgttgtacttgtcaaatacagaggttgatga 6594667  T
Q  139 tgaaacattttataagatctcaaagagttgttgcgggcttt 179  Q
    ||| ||| |   |  ||||||||||| |||||| |||||||    
T  6594668 tgagacactacgtgtgatctcaaagaattgttgtgggcttt 6594708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 628 - 683
Target Start/End: Original strand, 6136078 - 6136132
Alignment:
Q  628 gtgttgtgaatccccggacctccaagacccggatcgaaccacaccaatacaaagaa 683  Q
    ||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||    
T  6136078 gtgttgtgaatccccggacctccaag-gccggatcgaaccataccaatacaaagaa 6136132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 629 - 683
Target Start/End: Complemental strand, 6027638 - 6027585
Alignment:
Q  629 tgttgtgaatccccggacctccaagacccggatcgaaccacaccaatacaaagaa 683  Q
    ||||||||||||||||| |||||||||  ||||||||||||||||||||||||||    
T  6027638 tgttgtgaatccccggatctccaagact-ggatcgaaccacaccaatacaaagaa 6027585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 257
Target Start/End: Original strand, 7994144 - 7994362
Alignment:
Q  39 atttgaacttatccggatgttcaatagtgaagatacttgaaatgaactttaaagttcccaaattggaggtgttgaacttatcatatacaaaagttgacga 138  Q
    |||||||| || |||  ||| ||| ||||||| |||| | ||||||||||  |||||| ||  | |||||||||||| | ||| ||||||  ||| | ||    
T  7994144 atttgaacatagccgattgtacaagagtgaagctactaggaatgaactttgtagttccgaagctagaggtgttgaacatgtcaaatacaagggttaatga 7994243  T
Q  139 tgaaacattttataagatctcaaagagttgttgcgggctttcgaaattgttacttaaaaattgttatgatgtcacaaagaagggagtgaatcatgtggta 238  Q
     |||||| | |||  ||||||||||| |||||  || |||| | || | |||||| ||  |||| ||||||| ||  || |||||||||| |||||||||    
T  7994244 cgaaacactatatgtgatctcaaagaattgttctggacttttgcaactattacttgaactttgtaatgatgttaccgaggagggagtgaaacatgtggta 7994343  T
Q  239 gagaactgcacgcaactga 257  Q
    || ||||||||||||||||    
T  7994344 gaaaactgcacgcaactga 7994362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 64 - 249
Target Start/End: Original strand, 6589310 - 6589495
Alignment:
Q  64 agtgaagatacttgaaatgaactttaaagttcccaaattggaggtgttgaacttatcatatacaaaagttgacgatgaaacattttataagatctcaaag 163  Q
    ||||||| |||||| ||||||||||  ||||||||   |||||||||||||||| ||| ||||||| ||| | ||| ||||| | |||  |||||||||     
T  6589310 agtgaagctacttggaatgaactttgtagttcccatgctggaggtgttgaacttgtcaaatacaaatgttaatgataaaacactatatctgatctcaaaa 6589409  T
Q  164 agttgttgcgggctttcgaaattgttacttaaaaattgttatgatgtcacaaagaagggagtgaatcatgtggtagagaactgcac 249  Q
    | ||||   ||||||  | |||| | |||| ||  |||| || |||||||  || |||||||||| ||||||||||| ||||||||    
T  6589410 aattgtatagggcttatgcaattatcacttcaactttgtaattatgtcacggaggagggagtgaaacatgtggtagaaaactgcac 6589495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 236
Target Start/End: Complemental strand, 6410118 - 6409946
Alignment:
Q  64 agtgaagatacttgaaatgaactttaaagttcccaaattggaggtgttgaacttatcatatacaaaagttgacgatgaaacattttataagatctcaaag 163  Q
    ||||||| ||| || |||||||||| ||||||||||  || ||||||||||||  ||| ||||||  ||||| ||||||||  |||||  ||||||||||    
T  6410118 agtgaagctacatggaatgaactttgaagttcccaagctgaaggtgttgaactagtcaaatacaagcgttgatgatgaaactctttatgtgatctcaaag 6410019  T
Q  164 agttgttgcgggctttcgaaattgttacttaaaaattgttatgatgtcacaaagaagggagtgaatcatgtgg 236  Q
    | ||||||  |||||| | || | ||  |  | || ||| || |||||||| ||||||||||||| |||||||    
T  6410018 aattgttgtcggcttttgcaactatttttgtacaactgtgataatgtcacacagaagggagtgaaacatgtgg 6409946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 145
Target Start/End: Original strand, 6596890 - 6596996
Alignment:
Q  39 atttgaacttatccggatgttcaatagtgaagatacttgaaatgaactttaaagttcccaaattggaggtgttgaacttatcatatacaaaagttgacga 138  Q
    ||||||||| | ||| ||||||||  ||||||  ||||||||| |||||| || ||||| |  |||||||||||||||| |||  |||||| ||||| ||    
T  6596890 atttgaactgagccgaatgttcaagtgtgaagcgacttgaaataaactttgaaattccccagctggaggtgttgaacttgtcaagtacaaatgttgatga 6596989  T
Q  139 tgaaaca 145  Q
    |||||||    
T  6596990 tgaaaca 6596996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 629 - 683
Target Start/End: Complemental strand, 25421698 - 25421645
Alignment:
Q  629 tgttgtgaatccccggacctccaagacccggatcgaaccacaccaatacaaagaa 683  Q
    |||||||||||||||  |||||||| || ||||||||||||||||||||||||||    
T  25421698 tgttgtgaatccccgagcctccaaggcc-ggatcgaaccacaccaatacaaagaa 25421645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 81 - 127
Target Start/End: Complemental strand, 12102361 - 12102315
Alignment:
Q  81 tgaactttaaagttcccaaattggaggtgttgaacttatcatataca 127  Q
    |||||||| ||||||||||| |||||||||||||||| ||| |||||    
T  12102361 tgaactttgaagttcccaaactggaggtgttgaacttgtcacataca 12102315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 629 - 683
Target Start/End: Complemental strand, 34167472 - 34167419
Alignment:
Q  629 tgttgtgaatccccggacctccaagacccggatcgaaccacaccaatacaaagaa 683  Q
    |||||||||||||||  ||||||||  | ||||||||||||||||||||||||||    
T  34167472 tgttgtgaatccccgagcctccaaggtc-ggatcgaaccacaccaatacaaagaa 34167419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 81 - 169
Target Start/End: Complemental strand, 9411450 - 9411362
Alignment:
Q  81 tgaactttaaagttcccaaattggaggtgttgaacttatcatatacaaaagttgacgatgaaacattttataagatctcaaagagttgt 169  Q
    |||||||| | ||||||||  |||||||||||||||| |||||||||   |||  |||||||| | | ||| |||||||||||| ||||    
T  9411450 tgaactttgaggttcccaagctggaggtgttgaacttgtcatatacaggtgttttcgatgaaatactctatgagatctcaaagaattgt 9411362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 5e-21; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 79 - 171
Target Start/End: Complemental strand, 52082678 - 52082586
Alignment:
Q  79 aatgaactttaaagttcccaaattggaggtgttgaacttatcatatacaaaagttgacgatgaaacattttataagatctcaaagagttgttg 171  Q
    |||||||||| ||||| |||||||||||||||||||||| ||| | |||||| |||| ||||||||||| |||  ||||||||||||||||||    
T  52082678 aatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttg 52082586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 110 - 251
Target Start/End: Complemental strand, 7554554 - 7554413
Alignment:
Q  110 ttgaacttatcatatacaaaagttgacgatgaaacattttataagatctcaaagagttgttgcgggctttcgaaattgttacttaaaaattgttatgatg 209  Q
    |||||||||||||||||||  ||||| |||||| || | |||| |||||||||||||||| | || ||||   || ||||||| |||   ||| || |||    
T  7554554 ttgaacttatcatatacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttactgaaaggatgtgataatg 7554455  T
Q  210 tcacaaagaagggagtgaatcatgtggtagagaactgcacgc 251  Q
    ||||| | ||||||||||| ||||||||||| ||||||||||    
T  7554454 tcacagaaaagggagtgaagcatgtggtagaaaactgcacgc 7554413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 79 - 177
Target Start/End: Complemental strand, 52092874 - 52092776
Alignment:
Q  79 aatgaactttaaagttcccaaattggaggtgttgaacttatcatatacaaaagttgacgatgaaacattttataagatctcaaagagttgttgcgggct 177  Q
    |||||||||| ||||| ||||||||||||||||||||||  || | |||||| |||| ||||| ||||| |||  |||||||||||||| ||| |||||    
T  52092874 aatgaactttcaagtttccaaattggaggtgttgaacttggcaaagacaaaaattgatgatgacacattgtatgtgatctcaaagagtttttgtgggct 52092776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 56 - 164
Target Start/End: Original strand, 19468478 - 19468586
Alignment:
Q  56 tgttcaatagtgaagatacttgaaatgaactttaaagttcccaaattggaggtgttgaacttatcatatacaaaagttgacgatgaaacattttataaga 155  Q
    ||||||| ||||||  |||||| | ||||||||  |||||||||  ||||||||||||| || ||| ||||||| ||||| ||||||||| |||||  ||    
T  19468478 tgttcaagagtgaatctacttggagtgaactttgtagttcccaagctggaggtgttgaagttgtcagatacaaaggttgatgatgaaacactttatgtga 19468577  T
Q  156 tctcaaaga 164  Q
    |||||||||    
T  19468578 tctcaaaga 19468586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 56 - 228
Target Start/End: Complemental strand, 43635025 - 43634858
Alignment:
Q  56 tgttcaatagtgaagatacttgaaatgaactttaaagttcccaaattggaggtgttgaacttatcatatacaaaagttgacgatgaaacattttataaga 155  Q
    |||||||||||||| |  |||| ||||| ||||| ||| ||| |  | |||| ||||||||| ||||||||||| |||||||||| |||| |||||  ||    
T  43635025 tgttcaatagtgaaca--cttggaatgacctttagagtcccccagctagaggcgttgaacttgtcatatacaaaggttgacgatggaacactttatgtga 43634928  T
Q  156 tctcaaagagttgttgcgggctttcgaaattgttacttaaaaattgttatgatgtcacaaagaagggagtgaa 228  Q
     |||||||| |||| | || |||| ||| |||||||| || ||| |   |||||||||| |||||||||||||    
T  43634927 cctcaaagaattgtcgtggacttttgaatttgttactgaataatag---tgatgtcacagagaagggagtgaa 43634858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 104 - 348
Target Start/End: Complemental strand, 9581143 - 9580897
Alignment:
Q  104 gaggtgttgaacttatcatatacaaaa--gttgacgatgaaacattttataagatctcaaagagttgttgcgggctttcgaaattgttacttaaaaattg 201  Q
    |||||||||||||| |||| |||||||  ||| | ||||||||  |||||  ||||||||||| |||| | || |||| |    | ||||| ||| || |    
T  9581143 gaggtgttgaacttgtcatgtacaaaaaagttaatgatgaaacgctttatgtgatctcaaagaattgtcgtggacttttgtgccttttactgaaagatag 9581044  T
Q  202 ttatgatgtcacaaagaagggagtgaatcatgtggtagagaactgcacgcaactgagaatgatcagtttggatggttgtcataaagtaaatggtaatgtt 301  Q
    ||||| ||||||||| || |||||||| | ||||||||| || ||||| ||||||  |  |||   ||||   |||||| |||||||  || ||| |||     
T  9581043 ttatggtgtcacaaacaatggagtgaagcgtgtggtagaaaattgcacacaactggaagagattgatttgaggggttgttataaagtgcatcgtagtgtg 9580944  T
Q  302 gtggcctcaatggtatcttcaaggccgtcattgagaaagataatagc 348  Q
    ||  | |||||||||||||||||||| || |||||||||||||||||    
T  9580943 gtttcgtcaatggtatcttcaaggccatcgttgagaaagataatagc 9580897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 307 - 348
Target Start/End: Complemental strand, 43634066 - 43634025
Alignment:
Q  307 ctcaatggtatcttcaaggccgtcattgagaaagataatagc 348  Q
    ||||||||||| ||||||||| ||||||||||||||||||||    
T  43634066 ctcaatggtattttcaaggccatcattgagaaagataatagc 43634025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 629 - 683
Target Start/End: Complemental strand, 44204024 - 44203971
Alignment:
Q  629 tgttgtgaatccccggacctccaagacccggatcgaaccacaccaatacaaagaa 683  Q
    |||||||||||||||  ||||||||  | ||||||||||||||||||||||||||    
T  44204024 tgttgtgaatccccgagcctccaaggtc-ggatcgaaccacaccaatacaaagaa 44203971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 104 - 259
Target Start/End: Complemental strand, 39256 - 39101
Alignment:
Q  104 gaggtgttgaacttatcatatacaaaagttgacgatgaaacattttataagatctcaaagagttgttgcgggctttcgaaattgttacttaaaaattgtt 203  Q
    ||||||||||||||  ||| |||||| ||| | ||||||||| |||||  |||||||||||||||| | ||||||| | |  || ||||  |||| ||||    
T  39256 gaggtgttgaacttgacatttacaaaggttaatgatgaaacactttatgtgatctcaaagagttgtagtgggcttttgcacctgatactggaaaaatgtt 39157  T
Q  204 atgatgtcacaaagaagggagtgaatcatgtggtagagaactgcacgcaactgaga 259  Q
     |  |||||||| |||||||||||| ||||||||| | ||||||||||||||||||    
T  39156 ctcgtgtcacaatgaagggagtgaaacatgtggtaaacaactgcacgcaactgaga 39101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 7e-17; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 58 - 255
Target Start/End: Original strand, 1037645 - 1037842
Alignment:
Q  58 ttcaatagtgaagatacttgaaatgaactttaaagttcccaaattggaggtgttgaacttatcatatacaaaagttgacgatgaaacattttataagatc 157  Q
    ||||| ||||||  |||||  ||| ||||||||||||||  |||| |||||||| ||||| ||| |||||   ||||| ||||||||| | |||| ||||    
T  1037645 ttcaagagtgaaactacttagaataaactttaaagttcctgaattagaggtgtttaacttgtcacatacatgtgttgatgatgaaacactctatatgatc 1037744  T
Q  158 tcaaagagttgttgcgggctttcgaaattgttacttaaaaattgttatgatgtcacaaagaagggagtgaatcatgtggtagagaactgcacgcaact 255  Q
    ||||||| |||||| |||||||   || |||| ||  |||||||| |||| |||||| |||| || ||||| ||||| || || |||||||| |||||    
T  1037745 tcaaagaattgttgtgggcttttacaactgtttctggaaaattgtgatgaagtcacagagaatggtgtgaaacatgtagtcgaaaactgcacacaact 1037842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 83 - 255
Target Start/End: Original strand, 45245091 - 45245263
Alignment:
Q  83 aactttaaagttcccaaattggaggtgttgaacttatcatatacaaaagttgacgatgaaacattttataagatctcaaagagttgttgcgggctttcga 182  Q
    |||||| ||||||| ||| | ||||||||||| || ||| | ||||  ||||| ||||||||| |  ||  |||||||||||||||| | ||||||| |     
T  45245091 aactttgaagttccaaaacttgaggtgttgaatttgtcagagacaatggttgatgatgaaacactccatgtgatctcaaagagttgtcgtgggcttttgc 45245190  T
Q  183 aattgttacttaaaaattgttatgatgtcacaaagaagggagtgaatcatgtggtagagaactgcacgcaact 255  Q
    || | ||| | ||||| |||||| |||||||| | ||||||||||| ||||||||||| || ||||| |||||    
T  45245191 aactattattgaaaaaatgttatcatgtcacagataagggagtgaaacatgtggtagaaaattgcacacaact 45245263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 629 - 683
Target Start/End: Original strand, 13655805 - 13655858
Alignment:
Q  629 tgttgtgaatccccggacctccaagacccggatcgaaccacaccaatacaaagaa 683  Q
    |||||||||||||||||||||||||  | ||||||||||||||||||||||||||    
T  13655805 tgttgtgaatccccggacctccaaggtc-ggatcgaaccacaccaatacaaagaa 13655858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 629 - 683
Target Start/End: Original strand, 12647162 - 12647215
Alignment:
Q  629 tgttgtgaatccccggacctccaagacccggatcgaaccacaccaatacaaagaa 683  Q
    |||||||||||||||  |||||||| || ||||||||||||||||||||||||||    
T  12647162 tgttgtgaatccccgagcctccaaggcc-ggatcgaaccacaccaatacaaagaa 12647215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 161
Target Start/End: Original strand, 32785774 - 32785856
Alignment:
Q  79 aatgaactttaaagttcccaaattggaggtgttgaacttatcatatacaaaagttgacgatgaaacattttataagatctcaa 161  Q
    |||||||||||||| ||||||| | |||||||||||||| ||| |||||| | |||| |||||| || |||||  ||||||||    
T  32785774 aatgaactttaaagctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaa 32785856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 56 - 255
Target Start/End: Original strand, 603 - 802
Alignment:
Q  56 tgttcaatagtgaagatacttgaaatgaactttaaagttcccaaattggaggtgttgaacttatcatatacaaaagttgacgatgaaacattttataaga 155  Q
    ||||||| ||||||  |||||  ||| ||||||||||||||  |||| |||||||| ||||| ||| ||||||  || || ||||||||| | |||| ||    
T  603 tgttcaagagtgaaactacttagaataaactttaaagttcctgaattagaggtgtttaacttgtcacatacaagtgtcgatgatgaaacactctatatga 702  T
Q  156 tctcaaagagttgttgcgggctttcgaaattgttacttaaaaattgttatgatgtcacaaagaagggagtgaatcatgtggtagagaactgcacgcaact 255  Q
    |||| |||| |||||| ||||| |   || |||||||  |||||||| |||| |||| | |||| || ||||| ||||| ||||| |||||||| |||||    
T  703 tctcgaagaattgttgtgggctattacaactgttactggaaaattgtgatgaagtcatagagaatggtgtgaaacatgtagtagaaaactgcacacaact 802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 39 - 259
Target Start/End: Original strand, 15092113 - 15092333
Alignment:
Q  39 atttgaacttatccggatgttcaatagtgaagatacttgaaatgaactttaaagttcccaaattggaggtgttgaacttatcatatacaaaagttgacga 138  Q
    ||||||||||| | ||||||| ||  |||||  ||| || ||||||||||  ||||||| |  ||||||||||||| || ||| | ||||| ||| | ||    
T  15092113 atttgaacttaactggatgtttaagtgtgaaactacatggaatgaactttgcagttcccgagctggaggtgttgaatttgtcagaaacaaaggttaatga 15092212  T
Q  139 tgaaacattttataagatctcaaagagttgttgcgggctttcgaaattgttacttaaaaattgttatgatgtcacaaagaagggagtgaatcatgtggta 238  Q
    | ||||| | |||  ||||||||||| |||||| ||||||| | || | |||||| ||  ||||||| |||||||| |   ||||||||| |||||| ||    
T  15092213 taaaacactctatgcgatctcaaagaattgttgtgggcttttgcaactattacttgaattttgttataatgtcacagaagtgggagtgaaacatgtgcta 15092312  T
Q  239 gagaactgcacgcaactgaga 259  Q
    || |||||||| ||| |||||    
T  15092313 gaaaactgcacacaattgaga 15092333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 629 - 683
Target Start/End: Original strand, 18388536 - 18388589
Alignment:
Q  629 tgttgtgaatccccggacctccaagacccggatcgaaccacaccaatacaaagaa 683  Q
    ||||||||||||||| ||||||||| || ||||||||||||||||||||||||||    
T  18388536 tgttgtgaatccccgaacctccaaggcc-ggatcgaaccacaccaatacaaagaa 18388589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 629 - 683
Target Start/End: Original strand, 18391972 - 18392025
Alignment:
Q  629 tgttgtgaatccccggacctccaagacccggatcgaaccacaccaatacaaagaa 683  Q
    ||||||||||||||| ||||||||| || ||||||||||||||||||||||||||    
T  18391972 tgttgtgaatccccgaacctccaaggcc-ggatcgaaccacaccaatacaaagaa 18392025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 629 - 683
Target Start/End: Original strand, 6592116 - 6592169
Alignment:
Q  629 tgttgtgaatccccggacctccaagacccggatcgaaccacaccaatacaaagaa 683  Q
    |||||||||||||||  |||||||| || ||||||||||||||||||||||||||    
T  6592116 tgttgtgaatccccgagcctccaaggcc-ggatcgaaccacaccaatacaaagaa 6592169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 629 - 683
Target Start/End: Original strand, 6594334 - 6594387
Alignment:
Q  629 tgttgtgaatccccggacctccaagacccggatcgaaccacaccaatacaaagaa 683  Q
    |||||||||||||||  |||||||| || ||||||||||||||||||||||||||    
T  6594334 tgttgtgaatccccgagcctccaaggcc-ggatcgaaccacaccaatacaaagaa 6594387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 629 - 683
Target Start/End: Original strand, 32060098 - 32060151
Alignment:
Q  629 tgttgtgaatccccggacctccaagacccggatcgaaccacaccaatacaaagaa 683  Q
    ||||||||||||||| ||||||||| || ||||||||||||||||||| ||||||    
T  32060098 tgttgtgaatccccgaacctccaaggcc-ggatcgaaccacaccaatataaagaa 32060151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 629 - 683
Target Start/End: Original strand, 1560441 - 1560494
Alignment:
Q  629 tgttgtgaatccccggacctccaagacccggatcgaaccacaccaatacaaagaa 683  Q
    |||||||||||||||  ||||||||  | ||||||||||||||||||||||||||    
T  1560441 tgttgtgaatccccgagcctccaaggtc-ggatcgaaccacaccaatacaaagaa 1560494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 629 - 683
Target Start/End: Complemental strand, 6667 - 6614
Alignment:
Q  629 tgttgtgaatccccggacctccaagacccggatcgaaccacaccaatacaaagaa 683  Q
    |||||||||||||||   |||||||||| ||||||||||||||||||||||||||    
T  6667 tgttgtgaatccccgagtctccaagacc-ggatcgaaccacaccaatacaaagaa 6614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 629 - 683
Target Start/End: Original strand, 2380 - 2433
Alignment:
Q  629 tgttgtgaatccccggacctccaagacccggatcgaaccacaccaatacaaagaa 683  Q
    |||||||||||||||  ||||||||  | ||||||||||||||||||||||||||    
T  2380 tgttgtgaatccccgagcctccaaggtc-ggatcgaaccacaccaatacaaagaa 2433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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