View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18156_low_52 (Length: 282)
Name: NF18156_low_52
Description: NF18156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18156_low_52 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 11 - 269
Target Start/End: Complemental strand, 32169161 - 32168903
Alignment:
| Q |
11 |
cacagattcagcattcaaagggaatccagcagcagtgtgtttactagaagaagataaagatgatgaatggttgcaattagtagctgctgaattcaacatc |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32169161 |
cacagattcagcattcaaagggaatccagcagcagtgtgtttactagaagaagataaagatgatgaatggttgcaattagtagctgctgaattcaacatc |
32169062 |
T |
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| Q |
111 |
tctgaaacatgttatttgactcctattcatggaaactctattcctcgttttggtcttagatggtttactcctgttgctgaggtactgcaatttatcacca |
210 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32169061 |
tctgaaacatgttatttgactcctattcatggaacctctattcctcgttttggtcttagatggtttactcctgttgctgaggtactgcaatttatcacca |
32168962 |
T |
|
| Q |
211 |
caaatcatacatacnnnnnnnnnnnngtataatgtaactgtagaatttaagagccaagt |
269 |
Q |
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|||||||||||||| |||||||||||| |||||||||||||||||||| |
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| T |
32168961 |
caaatcatacatacttttttctttttgtataatgtaaccgtagaatttaagagccaagt |
32168903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 15 - 195
Target Start/End: Complemental strand, 32165366 - 32165186
Alignment:
| Q |
15 |
gattcagcattcaaagggaatccagcagcagtgtgtttactagaagaagataaagatgatgaatggttgcaattagtagctgctgaattcaacatctctg |
114 |
Q |
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||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |
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| T |
32165366 |
gattcagcattcaaagggaatccagcagctgtgtgtttattagaagaagataaagatgatgaatggttgcaatcagtagctgctgaattcaacatctcgg |
32165267 |
T |
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| Q |
115 |
aaacatgttatttgactcctattcatggaaactctattcctcgttttggtcttagatggtttactcctgttgctgaggtac |
195 |
Q |
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| T |
32165266 |
aaacatgttatctgacttctattcatggaacctctattcctcgttttggtcttagatggtttactcctgttgttgaggtac |
32165186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 19 - 193
Target Start/End: Complemental strand, 27350308 - 27350134
Alignment:
| Q |
19 |
cagcattcaaagggaatccagcagcagtgtgtttactagaagaagataaagatgatgaatggttgcaattagtagctgctgaattcaacatctctgaaac |
118 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||| |||| |
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| T |
27350308 |
cagcattcaaagggaatccagcagcagtgtgtttcttagaagaagataaagatgatgaatggttgcaatcattagctgctgaattcaatgtctctcaaac |
27350209 |
T |
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| Q |
119 |
atgttatttgactcctattcatggaaactctattcctcgttttggtcttagatggtttactcctgttgctgaggt |
193 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||| ||| |||||| |
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| T |
27350208 |
atgttatttgactcctattcatggaacctctattcctcgttttggtctgaaatggtttactcctattgttgaggt |
27350134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 23 - 182
Target Start/End: Complemental strand, 27325274 - 27325115
Alignment:
| Q |
23 |
attcaaagggaatccagcagcagtgtgtttactagaagaagataaagatgatgaatggttgcaattagtagctgctgaattcaacatctctgaaacatgt |
122 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||| ||||| |||||||| |
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| T |
27325274 |
attcaaagggaatccagcagcagtgtgtttcttagaagaagataaagatgatgaatggttgcaagcattagctgctgaattcaatgtctctcaaacatgt |
27325175 |
T |
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| Q |
123 |
tatttgactcctattcatggaaactctattcctcgttttggtcttagatggtttactcct |
182 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |
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| T |
27325174 |
tatttgactcctattcatggaacctctattcctcgttttggtctcagatggtttactcct |
27325115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 19 - 150
Target Start/End: Original strand, 27358165 - 27358296
Alignment:
| Q |
19 |
cagcattcaaagggaatccagcagcagtgtgtttactagaagaagataaagatgatgaatggttgcaattagtagctgctgaattcaacatctctgaaac |
118 |
Q |
| |
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|||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| | ||||| |||| ||||| || || || |
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| T |
27358165 |
cagcattcaaagggaatccagcagcagtatgtttattagaagaagataaagatgatgaatggttgcaagcattagcttctgagttcaatatgcctatgac |
27358264 |
T |
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| Q |
119 |
atgttatttgactcctattcatggaaactcta |
150 |
Q |
| |
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|||||||| | |||||||||||||| ||||| |
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| T |
27358265 |
ttgttatttaattcctattcatggaacctcta |
27358296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 194
Target Start/End: Complemental strand, 32158246 - 32158076
Alignment:
| Q |
24 |
ttcaaagggaatccagcagcagtgtgtttactagaagaagataaagatgatgaatggttgcaattagtagctgctgaattcaacatctctgaaacatgtt |
123 |
Q |
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||||| ||||| || |||||||||||||| |||| |||| || |||||||||||||||||| || |||| ||||| ||||||||| || || || | |
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| T |
32158246 |
ttcaaggggaaccctgcagcagtgtgtttgttagatcaagagaaggatgatgaatggttgcaagtattagcagctgagttcaacatcaatgttacctgct |
32158147 |
T |
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| Q |
124 |
atttgactcctattcatggaaact-ctattcctcgttttggtcttagatggtttactcctgttgctgaggta |
194 |
Q |
| |
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|||||| |||| ||| || |||| ||| ||| |||||| ||||||||||||||||||| ||| ||||||| |
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| T |
32158146 |
atttgattcct-gtcaagggaactactaatccccgttttcgtcttagatggtttactcccattgttgaggta |
32158076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 194
Target Start/End: Original strand, 29697561 - 29697731
Alignment:
| Q |
23 |
attcaaagggaatccagcagcagtgtgtttactagaagaagataaagatgatgaatggttgcaattagtagctgctgaattcaacatctctgaaacatgt |
122 |
Q |
| |
|
|||||||||||| || || |||||||||||| ||||| ||| || | ||||| |||||||| | || |||||||||||| || |||||||| ||| |
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| T |
29697561 |
attcaaagggaaccctgctgcagtgtgtttattagaataagttaca----atgaacagttgcaatcattaagtgctgaattcaatatatctgaaacctgt |
29697656 |
T |
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| Q |
123 |
tatttgact---cctattcatggaaactctattcctcgttttggtcttagatggtttactcctgttgctgaggta |
194 |
Q |
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||||| ||| ||||||||| || || || ||| ||||||||||| ||||||||||||| |||| |||||||| |
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| T |
29697657 |
tatttaacttatcctattcatagagcctttaatccccgttttggtctcagatggtttactcatgttactgaggta |
29697731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 194
Target Start/End: Original strand, 29689527 - 29689565
Alignment:
| Q |
156 |
cgttttggtcttagatggtttactcctgttgctgaggta |
194 |
Q |
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|||||||||||||||||||||||||||||| || ||||| |
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| T |
29689527 |
cgttttggtcttagatggtttactcctgttactaaggta |
29689565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 44288226 - 44288321
Alignment:
| Q |
18 |
tcagcattcaaagggaatccagcagcagtgtgtttactagaagaagataaagatgatgaatggttgcaattagtagctgctgaattcaacatctct |
113 |
Q |
| |
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||||| ||||| || || || |||||||||||||| |||||||||| | |||||||||||||||||| | |||| ||||| ||||| |||||| |
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| T |
44288226 |
tcagcgttcaagggaaaccctgcagcagtgtgtttgttagaagaagagagggatgatgaatggttgcaagcattagcagctgagttcaatatctct |
44288321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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