View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18157_high_1 (Length: 1003)
Name: NF18157_high_1
Description: NF18157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18157_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 928; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 928; E-Value: 0
Query Start/End: Original strand, 1 - 984
Target Start/End: Original strand, 653747 - 654729
Alignment:
| Q |
1 |
ttaaatcgcgtgtgagccaaaggcttagtaagaagatcagcgagttggtcttttgttgacacatgtgagacttgaatcttgccatccagaacttgttcac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
653747 |
ttaaatcgcgtgtgagccaaaggcttagtaagaagatcagcgagttggtcttttgttgacacatgtgagacttgaatcttgccatccagaacttgttcac |
653846 |
T |
|
| Q |
101 |
taacaaaatgatagtccatagatatatgcttcattttggagtgaatgattcgatcggagcagagatatgttgcaccaacgttgtcacatagtagcaatgg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
653847 |
taacaaaatgatagtccatagatatatgcttcattttggagtgaatgattcgatcggagcagagatatgttgcaccaacgttgtcacatagtagcaatgg |
653946 |
T |
|
| Q |
201 |
tggttttgacactggtagacgaagttcatgtaagagacgtgtgagccacactagttcagcagttgcggtggccactgcacggtattcagccccagttgaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
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|
| T |
653947 |
tggttttgacactggtagacgaagttcatgtaagagacttgtgagccacactagttcagcagttgcagtggccactgcacggtattcagcctcagttgaa |
654046 |
T |
|
| Q |
301 |
gacgtgctgcagtgtgttgtttgcgtgataaccaagaggtggggttactttcaagaaaaatgagatatgcaaatgtggatgtgcgatcttccatattgcc |
400 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
654047 |
gacgtgctacagtgcgttgtttgcgtgataaccaagaggtggggttactttcaagaaaaatgagatatgcaaatgtggatgtgcgatcttccatattgcc |
654146 |
T |
|
| Q |
401 |
accccagtctgcatccgtgaaagcataaagatggaaggatgatggttgcttcagaaaaatgccaaaattaatggtagcctttagataacgaagtagtctc |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
654147 |
accccagtctgcatccgtgaaagcataaagatggaaggatgatggttgcttcagaaaaatgccaaaattaatggtagcctttagataacgaagtagtctc |
654246 |
T |
|
| Q |
501 |
tttagatgttgcagatgaagtgatgtaggtttgtacatgaattgagaaagcttgttgatggcaattgaaagaccagtccttgtgagattaatatattgca |
600 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
654247 |
tttagatgttgcagatgaagtgatgttggtttgtacatgaattgagaaagcttgttgatggcaattgaaagatcagtcc-tgtgagattaatatattgca |
654345 |
T |
|
| Q |
601 |
gcactcctattatattttcctgtgatgagtggattctgtggtaggagttccatcattctgagtgagtgtggctgtagggaacagaggtgtgggtgccggt |
700 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
654346 |
gcactcctattatattttcctgtgatgagtggattctgtggtaggagttccatcattcagagtgagtgtggctgtagggaacagaggtgtgggtgccggt |
654445 |
T |
|
| Q |
701 |
ttggcgctagccatgtcaaacttctcaaggatttatcagttgaatctatgttgagacaacaacagacccttgtttgttggcatgagttcaataccaagga |
800 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
654446 |
ttggcgctagccatgtcaaacttctcaaggatttatcggttgaatctatgttgagacaacaacagacccttgtttgttgggatgagttcaataccaagga |
654545 |
T |
|
| Q |
801 |
agcagtgtggcgttcccatgttcttaagggaaaatctattggaaatggagtgaataaagttgtgtaagaattgggcatcattacctgttagcaaaagatc |
900 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
654546 |
agcagtgtggcgttcccatgttcttaaggaaaaatctattggaaatggagtgaataaagttgtgtaagaattgggcatcattacctgttagcaaaagatc |
654645 |
T |
|
| Q |
901 |
atcatcatagaccaagaagtaggcaatgattggacctgaggtatatataaacagggagaggtcactcttgctggtagtgaaacc |
984 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
654646 |
atcaacatagaccaagaagtaggcaatgattggacctgaggtatatataaacagggagaggtcactcttgctggtagtgaaacc |
654729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 7e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 244 - 564
Target Start/End: Complemental strand, 6407369 - 6407048
Alignment:
| Q |
244 |
agccacactagttcagcagttgcggtggccactgcacggtattcagccccagttgaaga-cgtgctgcagtgtgttgtttgcgtgataaccaagaggtgg |
342 |
Q |
| |
|
||||||| |||||||||| || ||||| || ||||||||||||||| ||||||| || |||||| |||| ||||||| |||||| |||||| | | |
|
|
| T |
6407369 |
agccacatgagttcagcagatgtagtggctacagcacggtattcagcctcagttgatgatcgtgctacagtacgttgtttttgtgatagccaagaaatag |
6407270 |
T |
|
| Q |
343 |
ggttactttcaagaaaaatgagatatgcaaatgtggatgtgcgatcttccatattgccaccccagtctgcatccgtgaaagcataaagatggaaggatga |
442 |
Q |
| |
|
| |||| | ||| ||| || |||||||| |||| || ||||| || |||||||| || |||||||||||||| || || ||| ||||| ||| || || |
|
|
| T |
6407269 |
gattacctccaaaaaagataagatatgctgatgttgaggtgcggtcatccatatttcctccccagtctgcatctgtaaaggcaagaagattgaatgagga |
6407170 |
T |
|
| Q |
443 |
tggttgcttcagaaaaatgccaaaattaatggtagcctttagataacgaagtagtctctttagatgttgcagatgaagtgatgtaggtttgtacatgaat |
542 |
Q |
| |
|
||||| ||| | | |||||||| |||||||| |||| | || |||||||| | ||||| |||||| |||||||| ||||||||||| | || |||| |
|
|
| T |
6407169 |
tggtttctttaagagtatgccaaagttaatggttcccttaatgtagcgaagtagccgctttaaatgttgaagatgaagggatgtaggtttatgcaagaat |
6407070 |
T |
|
| Q |
543 |
tgagaaagcttgttgatggcaa |
564 |
Q |
| |
|
|| || ||||||||||| |||| |
|
|
| T |
6407069 |
tgggagagcttgttgattgcaa |
6407048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 851 - 978
Target Start/End: Complemental strand, 6406763 - 6406636
Alignment:
| Q |
851 |
tgaataaagttgtgtaagaattgggcatcattacctgttagcaaaagatcatcatcatagaccaagaagtaggcaatgattggacctgaggtatatataa |
950 |
Q |
| |
|
||||| |||||||||| ||||| |||||||||||||||| || | ||||||| |||| |||||||||||||||||||| | ||| || | |||||| | |
|
|
| T |
6406763 |
tgaatgaagttgtgtaggaattctgcatcattacctgttaacagcaaatcatcaacatataccaagaagtaggcaatgatagcaccagaagcatatatga |
6406664 |
T |
|
| Q |
951 |
acagggagaggtcactcttgctggtagt |
978 |
Q |
| |
|
||| ||| ||||||| ||||| ||||| |
|
|
| T |
6406663 |
acaaagaggggtcacttttgcttgtagt |
6406636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 1e-16; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 316 - 589
Target Start/End: Original strand, 40112937 - 40113210
Alignment:
| Q |
316 |
gttgtttgcgtgataaccaagaggtggggttactttcaagaaaaatgagatatgcaaatgtggatgtgcgatcttccatattgccaccccagtctgcatc |
415 |
Q |
| |
|
||||||| ||||||| |||||| | || |||| | ||| ||| || |||||||| |||| || ||||| || |||||||| || |||||||||||||| |
|
|
| T |
40112937 |
gttgttttcgtgatagccaagaaataggattacctccaaaaaagataagatatgctgatgttgaggtgcggtcatccatatttcctccccagtctgcatc |
40113036 |
T |
|
| Q |
416 |
cgtgaaagcataaagatggaaggatgatggttgcttcagaaaaatgccaaaattaatggtagcctttagataacgaagtagtctctttagatgttgcaga |
515 |
Q |
| |
|
|| || ||| ||||| ||| || ||||||| ||| | | |||||||| |||||||| |||| | || |||||||| | ||||| |||||| ||| |
|
|
| T |
40113037 |
tgtaaaggcaagaagattgaatgaggatggtttctttaagagtatgccaaagttaatggttcccttaatgtagcgaagtagccgctttaaatgttgaaga |
40113136 |
T |
|
| Q |
516 |
tgaagtgatgtaggtttgtacatgaattgagaaagcttgttgatggcaattgaaagaccagtccttgtgagatt |
589 |
Q |
| |
|
||||| ||| ||||||| | ||||||||| || ||||||||||| |||| ||| ||| ||| || ||| ||||| |
|
|
| T |
40113137 |
tgaagggatataggtttatgcatgaattgggagagcttgttgattgcaaatgagagatcaggccgtgtcagatt |
40113210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 851 - 978
Target Start/End: Original strand, 40113470 - 40113597
Alignment:
| Q |
851 |
tgaataaagttgtgtaagaattgggcatcattacctgttagcaaaagatcatcatcatagaccaagaagtaggcaatgattggacctgaggtatatataa |
950 |
Q |
| |
|
||||| |||||||||| ||||| |||||||||||||||| || | ||||||| |||| |||||||||||||||||||| | ||| || | |||||| | |
|
|
| T |
40113470 |
tgaatgaagttgtgtaggaattctgcatcattacctgttaacagcaaatcatcaacatataccaagaagtaggcaatgatagcaccagaagcatatatga |
40113569 |
T |
|
| Q |
951 |
acagggagaggtcactcttgctggtagt |
978 |
Q |
| |
|
||| ||| ||||||| ||||| ||||| |
|
|
| T |
40113570 |
acaaagaggggtcacttttgcttgtagt |
40113597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 22 - 209
Target Start/End: Complemental strand, 2662935 - 2662748
Alignment:
| Q |
22 |
ggcttagtaagaagatcagcgagttggtcttttgttgacacatgtgagacttgaatcttgccatccagaacttgttcactaacaaaatgatagtccatag |
121 |
Q |
| |
|
||||| || ||||| ||||| ||||| || || || |||||||| |||||||| | ||| ||||| | |||||||||| ||||| |||||||||| | |
|
|
| T |
2662935 |
ggcttggtgagaaggtcagcaagttgatccttggtagacacatgagagacttgtagctttccatcacgtacttgttcacgcacaaagtgatagtccaagg |
2662836 |
T |
|
| Q |
122 |
atatatgcttcattttggagtgaatgattcgatcggagcagagatatgttgcaccaacgttgtcacatagtagcaatggtggttttga |
209 |
Q |
| |
|
|||| || |||||||||||||| | | | ||| ||||| |||||| | ||||| || || ||||||| ||||||||||| ||||| |
|
|
| T |
2662835 |
atatgtgtttcattttggagtggagaactggattagagcatagatatatggcacctacattatcacataagagcaatggtggctttga |
2662748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 526 - 560
Target Start/End: Original strand, 163435 - 163469
Alignment:
| Q |
526 |
taggtttgtacatgaattgagaaagcttgttgatg |
560 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| |
|
|
| T |
163435 |
taggtttgtgcatgaattgagaaagcttgttgatg |
163469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 209
Target Start/End: Complemental strand, 3020002 - 3019815
Alignment:
| Q |
22 |
ggcttagtaagaagatcagcgagttggtcttttgttgacacatgtgagacttgaatcttgccatccagaacttgttcactaacaaaatgatagtccatag |
121 |
Q |
| |
|
||||| || ||||| ||||| ||||| || || || |||||||| |||||||| | ||| ||||| | |||||||||| ||||| |||||||||| | |
|
|
| T |
3020002 |
ggcttggtgagaaggtcagcaagttgatccttggtagacacatgagagacttgtagctttccatcacgtacttgttcacgcacaaagtgatagtccaagg |
3019903 |
T |
|
| Q |
122 |
atatatgcttcattttggagtgaatgattcgatcggagcagagatatgttgcaccaacgttgtcacatagtagcaatggtggttttga |
209 |
Q |
| |
|
|||| || |||||||||||||| | | | ||| ||||| |||||||| ||||| || || ||||||| ||||||||||| ||||| |
|
|
| T |
3019902 |
atatgtgtttcattttggagtggagaactggattagagcatagatatgtggcacctacattatcacataagagcaatggtggctttga |
3019815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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