View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18157_high_10 (Length: 621)
Name: NF18157_high_10
Description: NF18157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18157_high_10 |
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| [»] chr7 (1 HSPs) |
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| [»] scaffold0325 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 587; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 587; E-Value: 0
Query Start/End: Original strand, 14 - 621
Target Start/End: Original strand, 34337130 - 34337737
Alignment:
| Q |
14 |
catagggattagagtgataagaaggtcatgggttcaacttccccctctaacaaaaatagcaactaactactattattggccattnnnnnnntatagacat |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
34337130 |
catagggattagagtgataagaaggtcatgggttcaacttccccctctaacaaaaatagcaactaactactattattggccattaaaaaaatatagacat |
34337229 |
T |
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| Q |
114 |
atttcttctgaatgctaactttctgcacacggttcaacaggaacatcatatacatgttatctatcatttcactgttattattttctttaattcgatggta |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34337230 |
atttcttctgaatgctaactttctgcacacggttcaacaggaacatcatatacatgttatctatcatttcactgttattattttctttaattcgatggta |
34337329 |
T |
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| Q |
214 |
tagtcatattatcttttcttttcagctaaagagtgatgttccataaatcttgtgtacttagattgcttccttcctcagtgtctataaccagaataattat |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34337330 |
tagtcatattatcttttcttttcagctaaagagtgatgttccataaatcttgtgtacttagattgcttccttcctcagtgtctataaccagaataattat |
34337429 |
T |
|
| Q |
314 |
tagttcatatgaaaatggaggaaactatattttactgtttaagaggcctctggaaatcaatacataactttttaagttgataagctaaactcgaagacta |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34337430 |
tagttcatatgaaaatggaggaaactatattttactgtttaagaggcctctggaaatcaatacataactttttaagttgataagctaaactcgaagacta |
34337529 |
T |
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| Q |
414 |
tctatgctgaccctacatataacttaaacaatgcagaatccccttttcttttgcaagaataatttgattgaagataaatatataaaattaaaaggatacg |
513 |
Q |
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| T |
34337530 |
tctatgctgaccctacatataacttaaacaatgcagaatccccttttcttttgcaagaataatttgattgaagataaatatataaaattaaaaggatacg |
34337629 |
T |
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| Q |
514 |
aaaaaatcaaggaggacacatcctccagcatctaccagccatggtagatttggtccgattgttgaccaatccaagctgcgcacaagtatgctacataaaa |
613 |
Q |
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| T |
34337630 |
aaaaaatcaaggaggacacatcctccagcatctaccagccatggtagatttggtccgattgttgaccaatccaagctgcgcacaagtatgctacataaaa |
34337729 |
T |
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| Q |
614 |
agataatg |
621 |
Q |
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|||||||| |
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| T |
34337730 |
agataatg |
34337737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 26 - 85
Target Start/End: Original strand, 16244624 - 16244683
Alignment:
| Q |
26 |
agtgataagaaggtcatgggttcaacttccccctctaacaaaaatagcaactaactacta |
85 |
Q |
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| T |
16244624 |
agtgataaagaggtcatgggttcaactcccctctctaacaaaaataataactaactacta |
16244683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 14 - 97
Target Start/End: Original strand, 41774489 - 41774572
Alignment:
| Q |
14 |
catagggattagagtgataagaaggtcatgggttcaacttccccctctaacaaaaatagcaactaactactattattggccatt |
97 |
Q |
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| T |
41774489 |
catagggattgaagagataaggaggccatgggttcaactcctccctccaacaaaaataacaactgactactaacattggccatt |
41774572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 503 - 609
Target Start/End: Original strand, 9071994 - 9072100
Alignment:
| Q |
503 |
aaaaggatacgaaaaaatcaaggaggacacatcctccagcatctaccagccatggtagatttggtccgattgttgaccaatccaagctgcgcacaagtat |
602 |
Q |
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|||||||||| ||| ||||||| | | ||||||||| | ||||| |||||||| |||||||| || | | |||||||||||| ||||| |||||||| |
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| T |
9071994 |
aaaaggatacaaaagaatcaagaatggaacatcctcctgattctacaagccatggaagatttggaccaagttttgaccaatccatgctgcttacaagtat |
9072093 |
T |
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| Q |
603 |
gctacat |
609 |
Q |
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| T |
9072094 |
gctacat |
9072100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 31 - 71
Target Start/End: Complemental strand, 15482672 - 15482632
Alignment:
| Q |
31 |
taagaaggtcatgggttcaacttccccctctaacaaaaata |
71 |
Q |
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| T |
15482672 |
taaggaggtcatgggttcaactcccccctctaacaaaaata |
15482632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 80
Target Start/End: Original strand, 40270892 - 40270933
Alignment:
| Q |
39 |
tcatgggttcaacttccccctctaacaaaaatagcaactaac |
80 |
Q |
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|||||||||||||| |||||||||||||||||| | |||||| |
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| T |
40270892 |
tcatgggttcaactaccccctctaacaaaaataactactaac |
40270933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0325 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0325
Description:
Target: scaffold0325; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 15287 - 15323
Alignment:
| Q |
25 |
gagtgataagaaggtcatgggttcaacttccccctct |
61 |
Q |
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|||||||||||| |||||||||||||||| ||||||| |
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| T |
15287 |
gagtgataagaaagtcatgggttcaacttacccctct |
15323 |
T |
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