View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18157_high_12 (Length: 591)

Name: NF18157_high_12
Description: NF18157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18157_high_12
NF18157_high_12
[»] chr5 (6 HSPs)
chr5 (4-299)||(4383589-4383884)
chr5 (307-575)||(4383938-4384206)
chr5 (200-287)||(4768899-4768984)
chr5 (12-78)||(4768774-4768841)
chr5 (408-507)||(36849605-36849704)
chr5 (154-202)||(4385434-4385482)
[»] chr2 (5 HSPs)
chr2 (392-574)||(34688665-34688850)
chr2 (392-574)||(34711077-34711262)
chr2 (402-571)||(16230914-16231087)
chr2 (466-574)||(35546677-35546785)
chr2 (452-506)||(35564747-35564801)
[»] chr3 (2 HSPs)
chr3 (402-501)||(46520169-46520268)
chr3 (411-507)||(49879597-49879693)


Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-156; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 4 - 299
Target Start/End: Original strand, 4383589 - 4383884
Alignment:
Q  4 gtgaaaagaacctaatgacaaatgatggaaatacttctatcagctataaaacctaaattgttttgcaaatgattctgttttcatcattacatctgggcag 103  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4383589 gtgataagaacctaatgacaaatgatggaaattcttctatcagctataaaacctaaattgttttgcaaatgattctgttttcatcattacatctgggcag 4383688  T
Q  104 tgacctgcggtgtacgacttgtattcactgatagtcgatcaagcatagcaaagcgagtagagctaaaagtgcaacgagcacaggaaggtaatcttgcaat 203  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4383689 tgacctgcggtttacgacttgtattcactgatagtcgatcaagcatagcaaagcgagtagagctaaaagtgcaacgagcacaggaaggtaatcttgcaat 4383788  T
Q  204 ggaattgtagtatttaaccacaacattataccctataacactaagaattgcatataatcgaaacactacaatgcagcttctctgctgtcaaagatg 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  4383789 ggaattgtagtatttaaccacaacattataccctataacactaagaattgcatataatcgaaaaactacaatgcagcttctctgctgtcaaagatg 4383884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 307 - 575
Target Start/End: Original strand, 4383938 - 4384206
Alignment:
Q  307 actccgtaatctttggtatgactatgatagacaacagaaactcagtggcaatcaacagaatgaatgcctactctcaagatgaaacttattagtattgatg 406  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  4383938 actccgtaatgtttgctatgactatgatagacaacagaaactcagtggcaatcaacagaatgaatgcctactctcaagaaggaacttattagtattgatg 4384037  T
Q  407 atgatgaagacgacatacaagatagaattgggttcaaccagaaggggatagatgctaaaaaggaattcgttgagccaaaagatgatcaagagaagcaaac 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4384038 atgatgaagacgacatacaagatagaattgggttcaaccagaaggggatagatgctaaaaaggaattcgttgagccaaaagatgatcaagagaagcaaac 4384137  T
Q  507 agagtcttcaaatgccacagctaatgagataaacaacaatgtgtcggttaatatatttggacagacttc 575  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4384138 agagtcttcaaatgccacagctaatgagataaacaacaatgtgtcggttaatatatttggacagacttc 4384206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 200 - 287
Target Start/End: Original strand, 4768899 - 4768984
Alignment:
Q  200 caatggaattgtagtatttaaccacaacattataccctataacactaagaattgcatataatcgaaacactacaatgcagcttctctg 287  Q
    |||| ||||||||||||||||||||| |||| |||||||||||||||||||||||  |||||||||| || |||||||||||||||||    
T  4768899 caatcgaattgtagtatttaaccacagcattgtaccctataacactaagaattgc--ataatcgaaaaacaacaatgcagcttctctg 4768984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 12 - 78
Target Start/End: Original strand, 4768774 - 4768841
Alignment:
Q  12 aacctaatgacaaatgatggaaatacttctatcagcta-taaaacctaaattgttttgcaaatgattc 78  Q
    ||||||||||||||||||||||||||||||||||| || |||||  ||||||||||||||||||||||    
T  4768774 aacctaatgacaaatgatggaaatacttctatcaggtactaaaagataaattgttttgcaaatgattc 4768841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 408 - 507
Target Start/End: Complemental strand, 36849704 - 36849605
Alignment:
Q  408 tgatgaagacgacatacaagatagaattgggttcaaccagaaggggatagatgctaaaaaggaattcgttgagccaaaagatgatcaagagaagcaaaca 507  Q
    ||||| ||| |||| ||||||  ||||||| ||||||||| |||||| ||||||| |||||||| ||  ||||||||||| ||| |||||||||||||||    
T  36849704 tgatgtagaggacaaacaagaaggaattggattcaaccaggaggggacagatgctcaaaaggaagtcagtgagccaaaagctgaacaagagaagcaaaca 36849605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 4385434 - 4385482
Alignment:
Q  154 aagcgagtagagctaaaagtgcaacgagcacaggaaggtaatcttgcaa 202  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  4385434 aagcgagcagagctaaaagtgcaacgagcacatgaaggtaatcttgcaa 4385482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 1e-27; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 392 - 574
Target Start/End: Original strand, 34688665 - 34688850
Alignment:
Q  392 ttattagtattgatgatgatgaagacgacatacaagatagaattgggttcaacca---gaaggggatagatgctaaaaaggaattcgttgagccaaaaga 488  Q
    |||||| ||||||||||||||||   ||||||| ||  |||| ||| ||||||||   | |||||||| |||||||| ||||| | ||||||||||||||    
T  34688665 ttattattattgatgatgatgaaattgacatacgaggcagaactggattcaaccaacaggaggggataaatgctaaacaggaacttgttgagccaaaaga 34688764  T
Q  489 tgatcaagagaagcaaacagagtcttcaaatgccacagctaatgagataaacaacaatgtgtcggttaatatatttggacagactt 574  Q
    |||||||||||||||||  ||||| |||||| |||||  || |||||| ||||| ||||||  |||| ||| ||||||||||||||    
T  34688765 tgatcaagagaagcaaatcgagtcctcaaataccacaattagtgagatgaacaataatgtggaggttgatacatttggacagactt 34688850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 392 - 574
Target Start/End: Original strand, 34711077 - 34711262
Alignment:
Q  392 ttattagtattgatgatgatgaagacgacatacaagatagaattgggttcaacca---gaaggggatagatgctaaaaaggaattcgttgagccaaaaga 488  Q
    |||||| ||||||||||||||||   ||||||| ||  |||| ||| ||||||||   | |||||||| |||||||| ||||| | ||||||||||||||    
T  34711077 ttattattattgatgatgatgaaattgacatacgaggcagaactggattcaaccaacaggaggggataaatgctaaacaggaacttgttgagccaaaaga 34711176  T
Q  489 tgatcaagagaagcaaacagagtcttcaaatgccacagctaatgagataaacaacaatgtgtcggttaatatatttggacagactt 574  Q
    |||||||||||||||||  ||||| |||||| |||||  || |||||| ||||| ||||||  |||| ||| ||||||||||||||    
T  34711177 tgatcaagagaagcaaatcgagtcctcaaataccacaattagtgagatgaacaataatgtggaggttgatacatttggacagactt 34711262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 402 - 571
Target Start/End: Original strand, 16230914 - 16231087
Alignment:
Q  402 tgatgatgatgaagacgacatacaagatagaattgggttcaaccagaagg---ggatagatgctaaaaaggaattcgttgagccaaaagatgatcaagag 498  Q
    ||||||||||||||  ||||||| ||  |||| ||||||||||||| |||   ||||| ||||||||||||||||||||||||||||||| |||||||||    
T  16230914 tgatgatgatgaagttgacatacgaggcagaactgggttcaaccagcaggaggggataaatgctaaaaaggaattcgttgagccaaaagacgatcaagag 16231013  T
Q  499 aagcaaacagagtcttcaaatgccacagctaa-tgagataaacaacaatgtgtcggttaatatatttggacaga 571  Q
    |||||||  || || |||||| |||||| ||| ||| || |||||  |||||  |||| ||| |||||||||||    
T  16231014 aagcaaatcgaatcctcaaataccacagttaagtgaaatgaacaatcatgtggaggttgatacatttggacaga 16231087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 466 - 574
Target Start/End: Complemental strand, 35546785 - 35546677
Alignment:
Q  466 aaggaattcgttgagccaaaagatgatcaagagaagcaaacagagtcttcaaatgccacagctaatgagataaacaacaatgtgtcggttaatatatttg 565  Q
    |||||||| |||||||| |||||||||||||||||| |||  ||||| | |||| | |||  |||||||||||||||||||||| ||||| ||| |||||    
T  35546785 aaggaatttgttgagcccaaagatgatcaagagaagaaaatcgagtccttaaatacgacaattaatgagataaacaacaatgtggcggttgatagatttg 35546686  T
Q  566 gacagactt 574  Q
    |||||||||    
T  35546685 gacagactt 35546677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 452 - 506
Target Start/End: Complemental strand, 35564801 - 35564747
Alignment:
Q  452 ggatagatgctaaaaaggaattcgttgagccaaaagatgatcaagagaagcaaac 506  Q
    ||||| ||||||| ||| |||| ||||||||||||||||||||||||||| ||||    
T  35564801 ggataaatgctaagaagcaatttgttgagccaaaagatgatcaagagaagaaaac 35564747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 402 - 501
Target Start/End: Original strand, 46520169 - 46520268
Alignment:
Q  402 tgatgatgatgaagacgacatacaagatagaattgggttcaaccagaaggggatagatgctaaaaaggaattcgttgagccaaaagatgatcaagagaag 501  Q
    ||||||||||||||| ||||||||||  |||||||| ||||||||  |||||| ||| |||||| || || |   ||| ||||||| |||||||||||||    
T  46520169 tgatgatgatgaagaggacatacaaggaagaattggattcaaccacgaggggacagacgctaaagagaaagtgagtgaaccaaaagttgatcaagagaag 46520268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 411 - 507
Target Start/End: Original strand, 49879597 - 49879693
Alignment:
Q  411 tgaagacgacatacaagatagaattgggttcaaccagaaggggatagatgctaaaaaggaattcgttgagccaaaagatgatcaagagaagcaaaca 507  Q
    |||||| ||||| ||||  |||| ||| |||| |||| | |||||| | | |||||| ||| || ||||| ||||||||||||||||||||||||||    
T  49879597 tgaagaggacattcaaggcagaactggattcatccaggatgggataaacgataaaaaagaaatcattgagtcaaaagatgatcaagagaagcaaaca 49879693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University