View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18157_high_16 (Length: 516)

Name: NF18157_high_16
Description: NF18157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18157_high_16
NF18157_high_16
[»] chr5 (16 HSPs)
chr5 (13-416)||(42840633-42841035)
chr5 (354-500)||(42840497-42840643)
chr5 (204-288)||(21699390-21699474)
chr5 (204-307)||(42729895-42729998)
chr5 (370-500)||(24655467-24655597)
chr5 (354-500)||(41996207-41996353)
chr5 (264-313)||(41996385-41996434)
chr5 (202-313)||(42411627-42411738)
chr5 (255-313)||(37408516-37408574)
chr5 (370-500)||(29416784-29416914)
chr5 (202-313)||(42414567-42414678)
chr5 (416-497)||(42413994-42414075)
chr5 (204-233)||(41996504-41996533)
chr5 (123-167)||(37408662-37408706)
chr5 (20-72)||(37408757-37408809)
chr5 (398-495)||(42777768-42777865)
[»] scaffold0068 (1 HSPs)
scaffold0068 (204-288)||(14436-14520)
[»] chr6 (1 HSPs)
chr6 (25-67)||(286803-286845)
[»] chr3 (1 HSPs)
chr3 (418-451)||(2703723-2703756)


Alignment Details
Target: chr5 (Bit Score: 368; Significance: 0; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 13 - 416
Target Start/End: Complemental strand, 42841035 - 42840633
Alignment:
Q  13 attattctcaagttggttatgatcgtgtgaaagatgactataagatgattcggtgtacacattgttcttcacaaactaaccgtcgttttggtctacagtt 112  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42841035 attattatcaagttg-ttatgatcgtgtgaaagatgactataagatgattcggtgtacacattgttcttcacaaactaaccgtcgttttggtctacagtt 42840937  T
Q  113 ttcttccttctgggagatttatagcctaaacaacaactcttggaggaaaattgattgcggtatgcatcattcagacaaatgcagcgaagaagtgtacatg 212  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  42840936 ttcttccttctcggagatttatagcctaaacaacaactcttggaggaaaattgattgcggtatgcatcattcagacaaatgcggtgaagaagtgtacatg 42840837  T
Q  213 gatggagtgtctcattggtgggatatagaagtaacacatacatatttggtttcatttgacttcagcaatgaatcttttattacaacacccataccttctt 312  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42840836 gatggaatgtctcattggtgggatatagaagtaacacatacatatttggtttcatttgacttcagcaatgaatcttttattacaacacccataccttctt 42840737  T
Q  313 atgaaggagatacttttgattttgattttaattataacaagaagagaaaattggtggtattaaatggatccattgcttttatagcaaactataaagagac 412  Q
     |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42840736 ttgaaggagatacttttgattttgattttaattataacaagaagagacaattggtggtattaaatggatccattgcttttatagcaaactataaagagac 42840637  T
Q  413 aact 416  Q
    ||||    
T  42840636 aact 42840633  T

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Target: chr5; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 354 - 500
Target Start/End: Complemental strand, 42840643 - 42840497
Alignment:
Q  354 aagagaaaattggtggtattaaatggatccattgcttttatagcaaactataaagagacaactacatttcaaatttcaattttgggtgaacttggtgtnn 453  Q
    |||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||      
T  42840643 aagagacaactggtggtattaaatggatccgttgcttttatagcaaactataaagagacaactacatttcacatttcaattttgggtgaacttggtgtaa 42840544  T
Q  454 nnnnntcatggactaaggtctttattgttggtcccttaccttacctt 500  Q
         ||||||||||| ||||||||||||||||||||||||| ||||    
T  42840543 aagaatcatggactaaagtctttattgttggtcccttaccttgcctt 42840497  T

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Target: chr5; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 204 - 288
Target Start/End: Original strand, 21699390 - 21699474
Alignment:
Q  204 gtgtacatggatggagtgtctcattggtgggatatagaagtaacacatacatatttggtttcatttgacttcagcaatgaatctt 288  Q
    ||||||||||||||||||| ||||||||||| || |  || | ||||| |||||||||| |||||||||||||||||||||||||    
T  21699390 gtgtacatggatggagtgtgtcattggtgggctaaaagagaagcacatgcatatttggtgtcatttgacttcagcaatgaatctt 21699474  T

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Target: chr5; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 204 - 307
Target Start/End: Original strand, 42729895 - 42729998
Alignment:
Q  204 gtgtacatggatggagtgtctcattggtgggatatagaagtaacacatacatatttggtttcatttgacttcagcaatgaatcttttattacaacaccca 303  Q
    ||||||||||||||||||| | ||||||||| || |  || | ||||| |||||||||| ||||||||||||| |||||||||||  |||||||||| ||    
T  42729895 gtgtacatggatggagtgtgtaattggtgggctaaaatagaagcacatgcatatttggtgtcatttgacttcaacaatgaatcttgcattacaacactca 42729994  T
Q  304 tacc 307  Q
    ||||    
T  42729995 tacc 42729998  T

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Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 370 - 500
Target Start/End: Original strand, 24655467 - 24655597
Alignment:
Q  370 tattaaatggatccattgcttttatagcaaactataaagagacaactacatttcaaatttcaattttgggtgaacttggtgtnnnnnnntcatggactaa 469  Q
    ||||||| || || |||||||| |||| ||  ||||||||||||  ||||||||| |||||||||||||| ||||| |||||       |||||||||||    
T  24655467 tattaaacgggtctattgctttcatagtaagttataaagagacaggtacatttcacatttcaattttgggagaactcggtgtaaaggaatcatggactaa 24655566  T
Q  470 ggtctttattgttggtcccttaccttacctt 500  Q
    | |||||||||| || ||||| |||| ||||    
T  24655567 gatctttattgtagggccctttccttgcctt 24655597  T

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Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 354 - 500
Target Start/End: Complemental strand, 41996353 - 41996207
Alignment:
Q  354 aagagaaaattggtggtattaaatggatccattgcttttatagcaaactataaagagacaactacatttcaaatttcaattttgggtgaacttggtgtnn 453  Q
    |||||| | ||| |||||||||||||||| |||||||||||   |||  |||   ||||| |||||||||| |||| ||||||||||||||||| |||      
T  41996353 aagagacatttgatggtattaaatggatctattgcttttatgttaaatcataccaagacatctacatttcacattttaattttgggtgaacttgatgtaa 41996254  T
Q  454 nnnnntcatggactaaggtctttattgttggtcccttaccttacctt 500  Q
         |||||||||||| |||| |||||||| || |||| |||||||    
T  41996253 aggaatcatggactaagctcttcattgttgggcctttacattacctt 41996207  T

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Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 264 - 313
Target Start/End: Complemental strand, 41996434 - 41996385
Alignment:
Q  264 tcatttgacttcagcaatgaatcttttattacaacacccataccttctta 313  Q
    |||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  41996434 tcatttgacttcagcaatgaatctttcattacaacacccataccctctta 41996385  T

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Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 202 - 313
Target Start/End: Original strand, 42411627 - 42411738
Alignment:
Q  202 aagtgtacatggatggagtgtctcattgg-tgggatatagaagtaacacatacatatttggtttcatttgacttcagcaatgaatcttttattacaacac 300  Q
    ||||||||||||||||||||||||||||| ||||  | || || ||||| |||||||||||| || ||||||||||||| ||||||||  |||| |  ||    
T  42411627 aagtgtacatggatggagtgtctcattggttgggtgaaagtag-aacacgtacatatttggtgtcgtttgacttcagcagtgaatcttgcattaaattac 42411725  T
Q  301 ccataccttctta 313  Q
    ||||||| |||||    
T  42411726 ccataccctctta 42411738  T

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Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 255 - 313
Target Start/End: Complemental strand, 37408574 - 37408516
Alignment:
Q  255 tatttggtttcatttgacttcagcaatgaatcttttattacaacacccataccttctta 313  Q
    |||||||| || ||||||||| |||| |||||||||||||||||||||||||| |||||    
T  37408574 tatttggtgtcgtttgacttctgcaaggaatcttttattacaacacccataccctctta 37408516  T

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Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 370 - 500
Target Start/End: Complemental strand, 29416914 - 29416784
Alignment:
Q  370 tattaaatggatccattgcttttatagcaaactataaagagacaactacatttcaaatttcaattttgggtgaacttggtgtnnnnnnntcatggactaa 469  Q
    |||||||||| || |||||||| |||  ||  |||| |||||||  ||||||||| |||||||||||||| ||||| |||||       |||||||||||    
T  29416914 tattaaatgggtctattgctttcataataagttatatagagacaggtacatttcacatttcaattttgggagaactcggtgtaaaggaatcatggactaa 29416815  T
Q  470 ggtctttattgttggtcccttaccttacctt 500  Q
    | |||||||||| || ||||| |||| ||||    
T  29416814 gatctttattgtagggccctttccttgcctt 29416784  T

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Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 202 - 313
Target Start/End: Original strand, 42414567 - 42414678
Alignment:
Q  202 aagtgtacatggatggagtgtctcattggtgggat-atagaagtaacacatacatatttggtttcatttgacttcagcaatgaatcttttattacaacac 300  Q
    ||||||||||||||||||||||||||||||  | | | || || || |||| ||  |||||| |||||||||||||||| ||||||||  |||| |||||    
T  42414567 aagtgtacatggatggagtgtctcattggttaggtgaaagtagaaa-acatccaagtttggtgtcatttgacttcagcagtgaatcttgcattataacac 42414665  T
Q  301 ccataccttctta 313  Q
    ||||||| |||||    
T  42414666 ccataccctctta 42414678  T

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Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 416 - 497
Target Start/End: Original strand, 42413994 - 42414075
Alignment:
Q  416 tacatttcaaatttcaattttgggtgaacttggtgtnnnnnnntcatggactaaggtctttattgttggtcccttaccttac 497  Q
    |||| |||| |||||||||||||| ||| |||||||       |||||||||||  ||||||||||||| ||||||||||||    
T  42413994 tacaattcacatttcaattttgggcgaatttggtgtaaaggagtcatggactaaactctttattgttggacccttaccttac 42414075  T

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Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 233
Target Start/End: Complemental strand, 41996533 - 41996504
Alignment:
Q  204 gtgtacatggatggagtgtctcattggtgg 233  Q
    ||||||||||||||||||||||||||||||    
T  41996533 gtgtacatggatggagtgtctcattggtgg 41996504  T

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Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 123 - 167
Target Start/End: Complemental strand, 37408706 - 37408662
Alignment:
Q  123 tgggagatttatagcctaaacaacaactcttggaggaaaattgat 167  Q
    |||||||| |||||||||||||  |||||||||| ||||||||||    
T  37408706 tgggagatgtatagcctaaacagtaactcttggaagaaaattgat 37408662  T

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Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 37408809 - 37408757
Alignment:
Q  20 tcaagttggttatgatcgtgtgaaagatgactataagatgattcggtgtacac 72  Q
    |||| |||||||||||| | | |||||||| ||||||||||||||||| ||||    
T  37408809 tcaaattggttatgatcatattaaagatgattataagatgattcggtgcacac 37408757  T

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Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 398 - 495
Target Start/End: Original strand, 42777768 - 42777865
Alignment:
Q  398 aaactataaagagacaactacatttcaaatttcaattttgggtgaacttggtgtnnnnnnntcatggactaaggtctttattgttggtcccttacctt 495  Q
    |||||| | ||| ||| |||||||||| ||||||||||| || ||||| |||||       |||||||||||| |||| ||||| || ||||||||||    
T  42777768 aaactacacagacacatctacatttcacatttcaattttaggcgaactcggtgtaaaagaatcatggactaagatcttcattgtagggcccttacctt 42777865  T

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Target: scaffold0068 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 204 - 288
Target Start/End: Complemental strand, 14520 - 14436
Alignment:
Q  204 gtgtacatggatggagtgtctcattggtgggatatagaagtaacacatacatatttggtttcatttgacttcagcaatgaatctt 288  Q
    ||||||||||||||||||| ||||||||||| || |  || | ||||| |||||||||| |||||||||||||||||||||||||    
T  14520 gtgtacatggatggagtgtgtcattggtgggctaaaagagaagcacatgcatatttggtgtcatttgacttcagcaatgaatctt 14436  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 67
Target Start/End: Complemental strand, 286845 - 286803
Alignment:
Q  25 ttggttatgatcgtgtgaaagatgactataagatgattcggtg 67  Q
    |||||||||||| ||| ||||||||||||||| ||||||||||    
T  286845 ttggttatgatcatgttaaagatgactataaggtgattcggtg 286803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 451
Target Start/End: Original strand, 2703723 - 2703756
Alignment:
Q  418 catttcaaatttcaattttgggtgaacttggtgt 451  Q
    |||| |||||||||||||||||||||||||||||    
T  2703723 cattccaaatttcaattttgggtgaacttggtgt 2703756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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