View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18157_high_17 (Length: 470)
Name: NF18157_high_17
Description: NF18157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18157_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 22 - 454
Target Start/End: Complemental strand, 31049188 - 31048765
Alignment:
| Q |
22 |
tcgtttgtgagggagcattagcgatgaatggaatgtactcatacttgcgggaggaagtttttatgttgcaagtatgagttagaagtctctgattgttccn |
121 |
Q |
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| T |
31049188 |
tcgtttgtgagggagcattagcgatgaatggaatgtactcatacttgcgggaggaagtttttatgttgcaagtatgagttagaaatctctgattgttccg |
31049089 |
T |
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| Q |
122 |
nnnnnnnnntattgaatagtatataggacgtgaattgtaaatctctctttgtttgaaaaaattaaggctgaccaaagtataagtaagatgactcgtaaac |
221 |
Q |
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| T |
31049088 |
aaaaaaa--tattgaatagtatatagggcgtgaattgtaaatctctctttgg----aaaaattaaggttgaccaaggtataagtaagatg-ctcgtaaac |
31048996 |
T |
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| Q |
222 |
ctaatctctcgaaaatttggtttaaattatactatcatctattattgtttttgtcctcatgtgagtaatcatgatactccctcgtaacccaacaaacata |
321 |
Q |
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| T |
31048995 |
ttaatatctcaaaaatttggtttaagatatactatcatctattattgtttttgtcctgatgtgagtaatcatgatactccctcgtaacccaacaaatata |
31048896 |
T |
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| Q |
322 |
gccctctctcatgttggatacaaacatgataggtttagtacattaatccttctgaaaaacacatattcatgatcaataatcttccaagttccaactagtg |
421 |
Q |
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| T |
31048895 |
gccctctc--atgctggatacaaacatgataggtttagtacattaatccttctgaaaaacacatattcatgatcaataatcttccaagttccaactagtg |
31048798 |
T |
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| Q |
422 |
caatgccctacgaagctagtacgagggactagg |
454 |
Q |
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| T |
31048797 |
caatgccctacgaagctagtacgagggactagg |
31048765 |
T |
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