View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18157_high_18 (Length: 445)

Name: NF18157_high_18
Description: NF18157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18157_high_18
NF18157_high_18
[»] chr3 (15 HSPs)
chr3 (19-430)||(3753719-3754130)
chr3 (112-368)||(4142736-4142992)
chr3 (112-368)||(4158546-4158802)
chr3 (247-365)||(3745168-3745286)
chr3 (268-373)||(967861-967966)
chr3 (253-373)||(2679178-2679298)
chr3 (243-365)||(2651142-2651264)
chr3 (25-64)||(4142670-4142709)
chr3 (25-64)||(4158480-4158519)
chr3 (253-371)||(2687085-2687203)
chr3 (261-349)||(803972-804060)
chr3 (268-342)||(1003714-1003788)
chr3 (268-342)||(1021711-1021785)
chr3 (268-374)||(1937720-1937826)
chr3 (234-310)||(1891770-1891846)
[»] chr5 (1 HSPs)
chr5 (197-365)||(11081379-11081547)
[»] chr8 (1 HSPs)
chr8 (241-374)||(19727108-19727241)
[»] chr1 (1 HSPs)
chr1 (265-341)||(25611754-25611830)
[»] chr4 (1 HSPs)
chr4 (275-376)||(20020552-20020653)


Alignment Details
Target: chr3 (Bit Score: 400; Significance: 0; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 19 - 430
Target Start/End: Complemental strand, 3754130 - 3753719
Alignment:
Q  19 ttatgattgtctgcaatacacacaatgccgttgcaagagccaatgataaaataaagtttgccataagtccgatcttcattagaaaggttatactcagatt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3754130 ttatgattgtctgcaatacacacaatgccgttgcaagagccaatgataaaataaagtttgccataagtccgatcttcattagaaaggttatactcagatt 3754031  T
Q  119 gtatgaagttagaggttatgtctctgaaaatagagtcgattggataagatgtgagaatatacttgtgtgaccaacggctgtagtttaggaagtggaggtt 218  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3754030 gtatgaagttagaggttatgtctgtgaaaatagagtcgattggataagatgtgagaatatacttgtgtgaccaacggctgtagtttaggaagtggaggtt 3753931  T
Q  219 ccgagcgatggacacacggagttgtttcttgacgaattttggatcggatattagaaaattccatgacttgcaaacacatcggaatcgaaggatgaacttt 318  Q
    || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3753930 ccaagcgatggacacactgagttgtttcttgacgaattttggatcggatattagaaaattccatgacttgcaaacacatcggaatcgaaggatgaacttt 3753831  T
Q  319 accggtaacctacataggatttctggaatgacgtcgtaaggaagagttggaagtgaatggttataacggcggtgattgggtgaaggtggtacaaccgaga 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3753830 accggtaacctacataggatttctggaatgacgtcgtaaggaagagttggaagtgaatggttataacggcggtgattgggtgaaggtggtacaaccgaga 3753731  T
Q  419 gctgattgtgat 430  Q
    ||||||||||||    
T  3753730 gctgattgtgat 3753719  T

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Target: chr3; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 112 - 368
Target Start/End: Original strand, 4142736 - 4142992
Alignment:
Q  112 tcagattgtatgaagttagaggttatgtctctgaaaatagagtcgattggataagatgtgagaatatacttgtgtgac-caacggctgtagtttaggaag 210  Q
    ||||||||| |||||||||||||||||||| |||||  |||||| | |||||||||||||||||| |||||   |||  ||  ||| ||||||| |||||    
T  4142736 tcagattgtgtgaagttagaggttatgtctgtgaaatcagagtccagtggataagatgtgagaatgtactttcttgagtcataggc-gtagtttcggaag 4142834  T
Q  211 tggaggttccgagcgatggacacacggagttgtttcttgacgaattttggatcggatattagaaaattccatgacttgcaaacacatcggaatcgaagga 310  Q
    ||||||||||||| | ||||||||| |||||| |||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  4142835 tggaggttccgagtggtggacacacagagttgcttcttgacgaatttgggatcagatattagagaattccatgacttgcaaacacatcggaatcgaagga 4142934  T
Q  311 tgaactttaccggtaacctacataggatttctggaatgacgtcgtaaggaagagttgg 368  Q
    |||||||||| |||| |||||||| ||||||||||||||||||| |||||||||||||    
T  4142935 tgaactttactggtagcctacatatgatttctggaatgacgtcggaaggaagagttgg 4142992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 112 - 368
Target Start/End: Original strand, 4158546 - 4158802
Alignment:
Q  112 tcagattgtatgaagttagaggttatgtctctgaaaatagagtcgattggataagatgtgagaatatacttgtgtgac-caacggctgtagtttaggaag 210  Q
    ||||||||| ||||||||||| |||||||| |||||  |||||||| ||| |||||||||||||| |||||   |||  ||  |||  ||||||||||||    
T  4158546 tcagattgtgtgaagttagagtttatgtctgtgaaatcagagtcgagtgggtaagatgtgagaatgtactttcttgagtcataggca-tagtttaggaag 4158644  T
Q  211 tggaggttccgagcgatggacacacggagttgtttcttgacgaattttggatcggatattagaaaattccatgacttgcaaacacatcggaatcgaagga 310  Q
    ||||||||||||| | ||||||||| |||||| |||||||||||||| ||||| ||||||||| ||||||||||||||||||||||| ||||||| ||||    
T  4158645 tggaggttccgagtggtggacacacagagttgcttcttgacgaatttgggatcagatattagagaattccatgacttgcaaacacattggaatcggagga 4158744  T
Q  311 tgaactttaccggtaacctacataggatttctggaatgacgtcgtaaggaagagttgg 368  Q
    ||||||||||||||| |||||||| ||||||| ||||||||||| |||||||||||||    
T  4158745 tgaactttaccggtagcctacatatgatttctagaatgacgtcggaaggaagagttgg 4158802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 247 - 365
Target Start/End: Complemental strand, 3745286 - 3745168
Alignment:
Q  247 ttgacgaattttggatcggatattagaaaattccatgacttgcaaacacatcggaatcgaaggatgaactttaccggtaacctacataggatttctggaa 346  Q
    ||||| ||||| ||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||| |||||||||||    
T  3745286 ttgacaaatttgggatcagatattagagaattccatgacttgcaaacacatcggaattgaaggatgaacttcaccggtagcctacataagatttctggaa 3745187  T
Q  347 tgacgtcgtaaggaagagt 365  Q
    |||||||| ||||||||||    
T  3745186 tgacgtcggaaggaagagt 3745168  T

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Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 268 - 373
Target Start/End: Complemental strand, 967966 - 967861
Alignment:
Q  268 attagaaaattccatgacttgcaaacacatcggaatcgaaggatgaactttaccggtaacctacataggatttctggaatgacgtcgtaaggaagagttg 367  Q
    |||||| ||||||| |||||||| |||||||||||| | | || || |||||||| || ||||||||| |||||||||||||  ||| |||||||||| |    
T  967966 attagagaattccacgacttgcacacacatcggaattgcatgaggagctttaccgatagcctacatagaatttctggaatgagatcgaaaggaagagtcg 967867  T
Q  368 gaagtg 373  Q
    ||||||    
T  967866 gaagtg 967861  T

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Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 253 - 373
Target Start/End: Original strand, 2679178 - 2679298
Alignment:
Q  253 aattttggatcggatattagaaaattccatgacttgcaaacacatcggaatcgaaggatgaactttaccggtaacctacataggatttctggaatgacgt 352  Q
    |||||||||||||| || ||| | |||||||||||||| |||||||||| | |||||| ||| || ||| |||||||| | || || ||||| |||| ||    
T  2679178 aattttggatcggagatcagagatttccatgacttgcagacacatcggagttgaaggaggaatttcacctgtaacctagacagtatatctgggatgaggt 2679277  T
Q  353 cgtaaggaagagttggaagtg 373  Q
    || |||||||||| |||||||    
T  2679278 cgaaaggaagagtgggaagtg 2679298  T

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Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 243 - 365
Target Start/End: Original strand, 2651142 - 2651264
Alignment:
Q  243 tttcttgacgaattttggatcggatattagaaaattccatgacttgcaaacacatcggaatcgaaggatgaactttaccggtaacctacataggatttct 342  Q
    |||| ||| ||||||  ||||||| || ||| ||||||||| |||||| |||||||| | | ||| || || ||||||||||||||||| ||| ||||||    
T  2651142 tttcatgatgaatttgtgatcggagataagagaattccatggcttgcagacacatcgaagttgaaagaggagctttaccggtaacctacgtagaatttct 2651241  T
Q  343 ggaatgacgtcgtaaggaagagt 365  Q
     |||| | |||| ||||||||||    
T  2651242 tgaataaggtcgaaaggaagagt 2651264  T

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Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 25 - 64
Target Start/End: Original strand, 4142670 - 4142709
Alignment:
Q  25 ttgtctgcaatacacacaatgccgttgcaagagccaatga 64  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  4142670 ttgtctgcaagacacacaatgccgttgcaagagccaatga 4142709  T

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Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 25 - 64
Target Start/End: Original strand, 4158480 - 4158519
Alignment:
Q  25 ttgtctgcaatacacacaatgccgttgcaagagccaatga 64  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  4158480 ttgtctgcaatacacacaatgccgttgcaagaaccaatga 4158519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 253 - 371
Target Start/End: Original strand, 2687085 - 2687203
Alignment:
Q  253 aattttggatcggatattagaaaattccatgacttgcaaacacatcggaatcgaaggatgaactttaccggtaacctacataggatttctggaatgacgt 352  Q
    |||||||||||||| || ||| | |||||||||||||| |||||||||| | |||||| ||| || ||| | |||||| | || || ||||| |||| ||    
T  2687085 aattttggatcggagatcagagatttccatgacttgcagacacatcggagttgaaggaggaatttcacctgcaacctagacagtatatctgggatgaggt 2687184  T
Q  353 cgtaaggaagagttggaag 371  Q
    || ||||||| || |||||    
T  2687185 cgaaaggaagggtgggaag 2687203  T

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Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 261 - 349
Target Start/End: Original strand, 803972 - 804060
Alignment:
Q  261 atcggatattagaaaattccatgacttgcaaacacatcggaatcgaaggatgaactttaccggtaacctacataggatttctggaatga 349  Q
    |||| |||||||| ||||||||||||||||||| ||||||| | |||| | |||||| || ||||||| ||| |  ||||||| |||||    
T  803972 atcgcatattagagaattccatgacttgcaaacgcatcggagttgaagtaagaacttcacaggtaaccaacacaaaatttctgcaatga 804060  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 268 - 342
Target Start/End: Complemental strand, 1003788 - 1003714
Alignment:
Q  268 attagaaaattccatgacttgcaaacacatcggaatcgaaggatgaactttaccggtaacctacataggatttct 342  Q
    |||||||||||||||||||||||| | ||||| | | |||||| || ||| || |||||||||  ||||||||||    
T  1003788 attagaaaattccatgacttgcaagcgcatcgaagttgaaggaggagcttcactggtaacctagctaggatttct 1003714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 268 - 342
Target Start/End: Complemental strand, 1021785 - 1021711
Alignment:
Q  268 attagaaaattccatgacttgcaaacacatcggaatcgaaggatgaactttaccggtaacctacataggatttct 342  Q
    |||||||||||||||||||||||| | ||||| | | |||||| || ||| || |||||||||  ||||||||||    
T  1021785 attagaaaattccatgacttgcaagcgcatcgaagttgaaggaggagcttcactggtaacctagctaggatttct 1021711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 268 - 374
Target Start/End: Original strand, 1937720 - 1937826
Alignment:
Q  268 attagaaaattccatgacttgcaaacacatcggaatcgaaggatgaactttaccggtaacctacataggatttctggaatgacgtcgtaaggaagagttg 367  Q
    |||||| ||||| ||||||||||||| || |||||||  |||| ||  || |||| || |||| | ||||||||||||||||  ||  |||||||||| |    
T  1937720 attagagaattctatgacttgcaaacgcaccggaatctcaggaggagtttcaccgatagcctagagaggatttctggaatgagatcaaaaggaagagtgg 1937819  T
Q  368 gaagtga 374  Q
    |||||||    
T  1937820 gaagtga 1937826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 234 - 310
Target Start/End: Original strand, 1891770 - 1891846
Alignment:
Q  234 acggagttgtttcttgacgaattttggatcggatattagaaaattccatgacttgcaaacacatcggaatcgaagga 310  Q
    |||||| |||||| || |||| || | |||||| |||||| |||||||||||||||| ||| |||||| | ||||||    
T  1891770 acggaggtgtttcatggcgaacttggaatcggagattagagaattccatgacttgcagacagatcggagttgaagga 1891846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 197 - 365
Target Start/End: Complemental strand, 11081547 - 11081379
Alignment:
Q  197 tgtagtttaggaagtggaggttccgagcgatggacacacggagttgtttcttgacgaattttggatcggatattagaaaattccatgacttgcaaacaca 296  Q
    |||||||||||||||||||||| |||| |  |||||||||||||||||||||||||||||| ||||| ||||||| | |||| || ||||||||||||||    
T  11081547 tgtagtttaggaagtggaggtttcgagtggcggacacacggagttgtttcttgacgaatttgggatcagatattaaagaatttcacgacttgcaaacaca 11081448  T
Q  297 tcggaatcgaaggatgaactttaccggtaacctacataggatttctggaatgacgtcgtaaggaagagt 365  Q
    | ||||||||||||||||||| |||||||||||||||||||||||| ||||||  ||| ||||||||||    
T  11081447 ttggaatcgaaggatgaacttaaccggtaacctacataggatttctagaatgagatcggaaggaagagt 11081379  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 241 - 374
Target Start/End: Complemental strand, 19727241 - 19727108
Alignment:
Q  241 tgtttcttgacgaattttggatcggatattagaaaattccatgacttgcaaacacatcggaatcgaaggatgaactttaccggtaacctacataggattt 340  Q
    ||||| ||| |||||||  |||| || |||||| ||||| | ||||||||||||||||||||  | | || ||| || || |||| ||||| ||| ||||    
T  19727241 tgtttgttggcgaatttgtgatcagagattagagaattcaacgacttgcaaacacatcggaactgcaagaggaatttcacgggtagcctacttagaattt 19727142  T
Q  341 ctggaatgacgtcgtaaggaagagttggaagtga 374  Q
    |||||||||  ||| |||||||||| ||||||||    
T  19727141 ctggaatgagatcgaaaggaagagtaggaagtga 19727108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 265 - 341
Target Start/End: Original strand, 25611754 - 25611830
Alignment:
Q  265 gatattagaaaattccatgacttgcaaacacatcggaatcgaaggatgaactttaccggtaacctacataggatttc 341  Q
    ||||||||| |||||||||||||||| || || | |||| |||||| |||||| ||||| | |||||| ||||||||    
T  25611754 gatattagagaattccatgacttgcagacgcaacagaattgaaggaggaacttgaccgggagcctacaaaggatttc 25611830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 376
Target Start/End: Original strand, 20020552 - 20020653
Alignment:
Q  275 aattccatgacttgcaaacacatcggaatcgaaggatgaactttaccggtaacctacataggatttctggaatgacgtcgtaaggaagagttggaagtga 374  Q
    |||||||||| || || |||||||| | | |||||| || ||| || ||||||||||| || ||||||  ||||| |||| |||||||| | ||||||||    
T  20020552 aattccatgaattacatacacatcgaagttgaaggaggagcttcactggtaacctacacagaatttcttcaatgaggtcgaaaggaagaatgggaagtga 20020651  T
Q  375 at 376  Q
    ||    
T  20020652 at 20020653  T

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