View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18157_high_20 (Length: 431)
Name: NF18157_high_20
Description: NF18157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18157_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 5 - 326
Target Start/End: Complemental strand, 5820079 - 5819760
Alignment:
| Q |
5 |
ggcttgtgtctatattataatatgatcttctctctaaagctctaaaattcttagcattagactctattttaaattgttagggcgtatttatacctaacac |
104 |
Q |
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| T |
5820079 |
ggcttgtgtctatattttaatatgatcttctctctaaagctctaaaactctttgcattagactctattttaaattgttagggcgtatttatacctaacac |
5819980 |
T |
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| Q |
105 |
taattattttgttagtcgaaatcgatagataggcaattagatgataatgctagtttctccccagtcgatggaaggttaggcaaagaaaatatcagttgaa |
204 |
Q |
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| T |
5819979 |
taattattttgttagtcgaaatcgttagataggcaattagatgataatgctagtttctccccagtcgatggaaggttaggcaaagaaaatatcagttgaa |
5819880 |
T |
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| Q |
205 |
caagggtcgaacgattcgttctcgagtctaatgacaagtatgtgagcagtagaatttggacaatgagacaactatacccacactccctatatatagtgtc |
304 |
Q |
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| T |
5819879 |
caagggtcaaatgattcgttctcgagtctaatgacaagtatgtgagta-tagaatttggacagtgagac-actatacccacactccctatatatagtgtc |
5819782 |
T |
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| Q |
305 |
actaacaacgaagaacgattag |
326 |
Q |
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| T |
5819781 |
actaacaacaaagagcgattag |
5819760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 340 - 414
Target Start/End: Complemental strand, 5819701 - 5819626
Alignment:
| Q |
340 |
ttaagtaacttattttgcaagaaaccttatgaaaa-cctcccttttgtgtgaatgttagaaagaggggtcattaat |
414 |
Q |
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| T |
5819701 |
ttaagtaacttattttgcaagaaaccttatgaaaaacctcccttttgtgtaaatgttagacagaggggtcattaat |
5819626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 379
Target Start/End: Complemental strand, 29331080 - 29331044
Alignment:
| Q |
343 |
agtaacttattttgcaagaaaccttatgaaaacctcc |
379 |
Q |
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| T |
29331080 |
agtaacttgttttgcaagaaaccttatgaaaaactcc |
29331044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 19239830 - 19239870
Alignment:
| Q |
89 |
tatttatacctaacactaattattttgttagtcgaaatcga |
129 |
Q |
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| T |
19239830 |
tatttacacctaaaaataattattttgttagtcgaaatcga |
19239870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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