View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18157_high_27 (Length: 313)
Name: NF18157_high_27
Description: NF18157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18157_high_27 |
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Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 7 - 292
Target Start/End: Complemental strand, 2459332 - 2459047
Alignment:
| Q |
7 |
tcgaagaatatggtagtcaattgataggtgcttcattcttgtgtgaaatacaagatttgcacattggtagttggctccaatttttctgtgtaaatggttg |
106 |
Q |
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| T |
2459332 |
tcgaacaaaatggtaggcaattgataggtgcttcattcttgtgtgaaatacaagatttgcacattggtagttggctccaatttttctgtgtaaatggttg |
2459233 |
T |
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| Q |
107 |
acagttgagagagttgatagagtagttgtcgtggccagagtaattatgtggtggttaaaccaatggttcgatattcatcctttaatttgtagaggattga |
206 |
Q |
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| T |
2459232 |
acagttgagagagttgatagagtagttttcatggccagagtaattatgtggtggttaaaccaatggttcgatattcatcctttaatttgtagaggattga |
2459133 |
T |
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| Q |
207 |
ggaatcgtatattgtttcttgcaagaccacgaaactgcatttggaccaagatagacaatataggcacctatggatttccaatcagt |
292 |
Q |
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| T |
2459132 |
ggaatcgtatattgtttcttgcaagaccacgaaactgcatttggaccaagatagacaatataggcacatatggatttacaatcagt |
2459047 |
T |
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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 217 - 291
Target Start/End: Original strand, 19730949 - 19731023
Alignment:
| Q |
217 |
attgtttcttgcaagaccacgaaactgcatttggaccaagatagacaatataggcacctatggatttccaatcag |
291 |
Q |
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||||||||||||| ||||| |||| ||| |||||||||||||| |||||||| |||||| | ||||||| ||||| |
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| T |
19730949 |
attgtttcttgcacgaccatgaaattgcgtttggaccaagatacacaatataagcacctgtagatttcctatcag |
19731023 |
T |
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