View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18157_high_28 (Length: 312)

Name: NF18157_high_28
Description: NF18157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18157_high_28
NF18157_high_28
[»] chr8 (1 HSPs)
chr8 (5-296)||(10441352-10441643)


Alignment Details
Target: chr8 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 5 - 296
Target Start/End: Original strand, 10441352 - 10441643
Alignment:
Q  5 atgaacctcaagagaagccttagcgagatgatgaatggtgggccatttaagcatccaacggttaaagtaagcaataacagtctgaacccttgtttgctgt 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  10441352 atgaacctcaagagaagccttagcgagatgatgaatggtgggccatttaagcatccaacggttaaaataagcaataacagtctgaacccttgtttgctgt 10441451  T
Q  105 aacataacctcagaaacccaaacaccataagctcttttttcaacttcttcttcttcatgttcatcattcaacgttgttctccaaggaagaaccctttggt 204  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10441452 aacataacctctgaaacccaaacaccataagctctcttttcaacttcttcttcttcatgttcatcattcaacgttgttctccaaggaagaaccctttggt 10441551  T
Q  205 tacgatcataccaatccaataaaaccgttctcagtttatgggtttcatctttggagaagaatgatggtgaatcttctatgtcttctgttttt 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10441552 tacgatcataccaatccaataaaaccgttctcagtttatgggtttcatctttggagaagaatgatggtgaatcttctatgtcttctgttttt 10441643  T

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