View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18157_high_30 (Length: 294)

Name: NF18157_high_30
Description: NF18157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18157_high_30
NF18157_high_30
[»] chr3 (2 HSPs)
chr3 (7-294)||(1605213-1605502)
chr3 (220-274)||(29233208-29233262)
[»] chr7 (6 HSPs)
chr7 (179-288)||(18780147-18780256)
chr7 (7-179)||(18779947-18780120)
chr7 (50-99)||(25078301-25078350)
chr7 (211-273)||(18777370-18777432)
chr7 (51-99)||(18673931-18673978)
chr7 (217-269)||(18777458-18777509)
[»] chr5 (3 HSPs)
chr5 (202-272)||(34980521-34980591)
chr5 (212-288)||(34980409-34980485)
chr5 (50-96)||(3289717-3289763)
[»] chr2 (4 HSPs)
chr2 (218-268)||(28781195-28781245)
chr2 (52-99)||(14437218-14437265)
chr2 (202-271)||(16605174-16605243)
chr2 (216-270)||(5867689-5867743)
[»] chr8 (1 HSPs)
chr8 (211-275)||(33831878-33831942)
[»] chr1 (1 HSPs)
chr1 (216-271)||(39252694-39252748)
[»] chr6 (2 HSPs)
chr6 (214-255)||(6859510-6859551)
chr6 (214-266)||(3439045-3439097)


Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 7 - 294
Target Start/End: Original strand, 1605213 - 1605502
Alignment:
Q  7 tagattattctcaaacaccaacagccacaatatacacaaaacatccaaagaaaatacctaactacatctcataacactctaagacaagagtattnnnnnn 106  Q
    |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||           
T  1605213 tagattattctcaaacaccaacagccacaatatacacacaacacccaaagaaaatacctaactacatctcataacactctaagacaagagtatataaaaa 1605312  T
Q  107 nnnnn--tgagaaagatataaactaaagtgtttctgactaacgcatcttgtagcaaagagatagaacctatatattaagaaaaaacctcgtggcatgcaa 204  Q
           |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1605313 aaagaaatgagaaagatataaactaaagtgtttctgactaatgcaccttgtagcaaagagatagaacctatatattaagaaaaaacctcgtggcatgcaa 1605412  T
Q  205 gattttccaagcaagaaagtaaccaagtgaaggaaccaccttgcttgtcttgtacttcaagaaacaaccttaactgtcttgcacactacc 294  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  1605413 gattttctaagcaagaaagtaaccaagtgaaggaaccaccttgcttgtcttgcacttcaagaaacaaccttaattgtcttgcacactacc 1605502  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 274
Target Start/End: Original strand, 29233208 - 29233262
Alignment:
Q  220 aaagtaaccaagtgaaggaaccaccttgcttgtcttgtacttcaagaaacaacct 274  Q
    |||||||  |||||| |||||||||||| |||||||| |||||||||||||||||    
T  29233208 aaagtaaataagtgatggaaccaccttggttgtcttgcacttcaagaaacaacct 29233262  T

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Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 179 - 288
Target Start/End: Original strand, 18780147 - 18780256
Alignment:
Q  179 ttaagaaaaaacctcgtggcatgcaagattttccaagcaagaaagtaaccaagtgaaggaaccaccttgcttgtcttgtacttcaagaaacaaccttaac 278  Q
    |||||||||||||| ||||||||||||| || |||||||||||| ||||||||||| ||||||||| ||||||| ||| ||||||||||| |||||||      
T  18780147 ttaagaaaaaaccttgtggcatgcaagacttgccaagcaagaaactaaccaagtgatggaaccaccatgcttgtgttgaacttcaagaaataaccttact 18780246  T
Q  279 tgtcttgcac 288  Q
    ||||||||||    
T  18780247 tgtcttgcac 18780256  T

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Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 7 - 179
Target Start/End: Original strand, 18779947 - 18780120
Alignment:
Q  7 tagattattctcaaacacc-aacagccacaatatacacaaaacatccaaagaaaatacctaactacatctcataacactctaagacaagagtattnnnnn 105  Q
    ||||||||||||||||||| ||| | ||||||| |||||  ||  |||||||||||| |||||||||||||| ||||||||||||||||| |||          
T  18779947 tagattattctcaaacacctaacggtcacaatacacacatcac--ccaaagaaaatatctaactacatctcacaacactctaagacaagaatataagaaa 18780044  T
Q  106 nnnnnnt-gagaaagatataaactaaagtgtttctgact-aacgcatcttgtagcaaagagatagaacctatatat 179  Q
            ||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||    
T  18780045 aaagaaacgagaaagatataaactaaaatgtttctgacttaatgcatcttgtagcaaagagatagaacctatatat 18780120  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 25078350 - 25078301
Alignment:
Q  50 tccaaagaaaatacctaactacatctcataacactctaagacaagagtat 99  Q
    ||||||| |||||||||| ||||||||| |||||||||||||||||||||    
T  25078350 tccaaagcaaatacctaattacatctcacaacactctaagacaagagtat 25078301  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 273
Target Start/End: Original strand, 18777370 - 18777432
Alignment:
Q  211 ccaagcaagaaagtaaccaagtgaaggaaccaccttgcttgtcttgtacttcaagaaacaacc 273  Q
    |||| |||||||||||  || |||||||||||  |||||||||||| ||||||||||||||||    
T  18777370 ccaaacaagaaagtaaagaattgaaggaaccatattgcttgtcttgaacttcaagaaacaacc 18777432  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 99
Target Start/End: Original strand, 18673931 - 18673978
Alignment:
Q  51 ccaaagaaaatacctaactacatctcataacactctaagacaagagtat 99  Q
    ||||||||||||||||||||||||||| |||| |||||||  |||||||    
T  18673931 ccaaagaaaatacctaactacatctca-aacattctaagatcagagtat 18673978  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 269
Target Start/End: Original strand, 18777458 - 18777509
Alignment:
Q  217 aagaaagtaaccaagtgaaggaaccaccttgcttgtcttgtacttcaagaaac 269  Q
    |||||||||| ||||||||||||||||| | ||||||| | ||||||||||||    
T  18777458 aagaaagtaaacaagtgaaggaaccaccat-cttgtctcgcacttcaagaaac 18777509  T

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Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 202 - 272
Target Start/End: Complemental strand, 34980591 - 34980521
Alignment:
Q  202 caagattttccaagcaagaaagtaaccaagtgaaggaaccaccttgcttgtcttgtacttcaagaaacaac 272  Q
    ||||| || |||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||    
T  34980591 caagacttgccaagcaagaaagtaaacaagtgaaggaatcaccttgcttgtcttggacttcaagaaacaac 34980521  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 212 - 288
Target Start/End: Original strand, 34980409 - 34980485
Alignment:
Q  212 caagcaagaaagtaaccaagtgaaggaaccaccttgcttgtcttgtacttcaagaaacaaccttaactgtcttgcac 288  Q
    |||| |||||||||| ||| |||||||| ||||||||||| |||| ||||||||||||||||||   ||||||||||    
T  34980409 caagtaagaaagtaaacaactgaaggaatcaccttgcttgccttgcacttcaagaaacaaccttgcttgtcttgcac 34980485  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 50 - 96
Target Start/End: Complemental strand, 3289763 - 3289717
Alignment:
Q  50 tccaaagaaaatacctaactacatctcataacactctaagacaagag 96  Q
    |||||||||||||||||||||||||||| |||||||||||| |||||    
T  3289763 tccaaagaaaatacctaactacatctcacaacactctaagaaaagag 3289717  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 218 - 268
Target Start/End: Original strand, 28781195 - 28781245
Alignment:
Q  218 agaaagtaaccaagtgaaggaaccaccttgcttgtcttgtacttcaagaaa 268  Q
    ||||||||| |||||||||||||||||||| |||||||| |||||||||||    
T  28781195 agaaagtaaacaagtgaaggaaccaccttgattgtcttgcacttcaagaaa 28781245  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 52 - 99
Target Start/End: Original strand, 14437218 - 14437265
Alignment:
Q  52 caaagaaaatacctaactacatctcataacactctaagacaagagtat 99  Q
    ||||| |||||||||||||||||||| |||||| ||||||||||||||    
T  14437218 caaagtaaatacctaactacatctcacaacactttaagacaagagtat 14437265  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 271
Target Start/End: Complemental strand, 16605243 - 16605174
Alignment:
Q  202 caagattttccaagcaagaaagtaaccaagtgaaggaaccaccttgcttgtcttgtacttcaagaaacaa 271  Q
    ||||| ||||||||||||||| |||  ||||||||||||| ||||| ||| |||| |||| |||||||||    
T  16605243 caagactttccaagcaagaaattaaaaaagtgaaggaacctccttgtttgccttgcactttaagaaacaa 16605174  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 270
Target Start/End: Complemental strand, 5867743 - 5867689
Alignment:
Q  216 caagaaagtaaccaagtgaaggaaccaccttgcttgtcttgtacttcaagaaaca 270  Q
    ||||||||| | || ||||||||||| ||||  ||||||||||||||||||||||    
T  5867743 caagaaagtgatcaggtgaaggaacctccttatttgtcttgtacttcaagaaaca 5867689  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 211 - 275
Target Start/End: Complemental strand, 33831942 - 33831878
Alignment:
Q  211 ccaagcaagaaagtaaccaagtgaaggaaccaccttgcttgtcttgtacttcaagaaacaacctt 275  Q
    |||| ||||||||||| ||||||||| ||| ||||||||||| ||| ||||||||||| ||||||    
T  33831942 ccaatcaagaaagtaaacaagtgaagcaacaaccttgcttgtgttgcacttcaagaaataacctt 33831878  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 271
Target Start/End: Original strand, 39252694 - 39252748
Alignment:
Q  216 caagaaagtaaccaagtgaaggaaccaccttgcttgtcttgtacttcaagaaacaa 271  Q
    ||||||||||| ||||||||||||||||| ||||||||||| ||||||| ||||||    
T  39252694 caagaaagtaaacaagtgaaggaaccacc-tgcttgtcttgaacttcaataaacaa 39252748  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 6859510 - 6859551
Alignment:
Q  214 agcaagaaagtaaccaagtgaaggaaccaccttgcttgtctt 255  Q
    ||||||||||||||||||||||| ||| ||||||||||||||    
T  6859510 agcaagaaagtaaccaagtgaagcaactaccttgcttgtctt 6859551  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 266
Target Start/End: Complemental strand, 3439097 - 3439045
Alignment:
Q  214 agcaagaaagtaaccaagtgaaggaaccaccttgcttgtcttgtacttcaaga 266  Q
    ||||||||| ||| ||||||||| ||||||||||||| ||||| |||||||||    
T  3439097 agcaagaaaataaacaagtgaagcaaccaccttgcttatcttgcacttcaaga 3439045  T

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