View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18157_high_32 (Length: 285)
Name: NF18157_high_32
Description: NF18157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18157_high_32 |
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Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 12 - 268
Target Start/End: Original strand, 13448947 - 13449203
Alignment:
| Q |
12 |
gaatataccgattacctttggtggttttccacacaaggtgatatgatgaggaaaatttggaacaacaaaggaacttgaatccgaatcagaatctgtctga |
111 |
Q |
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| T |
13448947 |
gaatataccgattacctttggcggttttccacacaaggtgatatggtgaggaaaatttggaacaacaaaggaacttgaatccgaatcagaatctgtctga |
13449046 |
T |
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| Q |
112 |
gacataagtaaattgtttgttttgagggtttgcacgagggagacagcaaaaaggcacaatccattgaatgtgatgtttgggatctgaaacttatcggcca |
211 |
Q |
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| T |
13449047 |
gacttaagtaaattgtttgttttgagggtttccacgagggagacagcaaaaaggcacaatccattgaatgtgatgtttgggatctgaaacttatcggcca |
13449146 |
T |
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| Q |
212 |
agtcattaacccatggatacgtggagtcggagatgatacaatccggtggatcattct |
268 |
Q |
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| T |
13449147 |
agtcattaacccatgggtacgtggagtcggagatgatacaatccggtggatcattct |
13449203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 21 - 266
Target Start/End: Original strand, 13455427 - 13455672
Alignment:
| Q |
21 |
gattacctttggtggttttccacacaaggtgatatgatgaggaaaatttggaacaacaaaggaacttgaatccgaatcagaatctgtctgagacataagt |
120 |
Q |
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| T |
13455427 |
gattaactttggcggtttttcacataaggtgatatgatgaggaaaatttggaacaacaaaggtacttgaatccgaatcaaaatttgtatcagaatgaagt |
13455526 |
T |
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| Q |
121 |
aaattgtttgttttgagggtttgcacgagggagacagcaaaaaggcacaatccattgaatgtgatgtttgggatctgaaacttatcggccaagtcattaa |
220 |
Q |
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| T |
13455527 |
aaattgtttgttttgagggtctccattagggagacggcaaaaaggcacattccgttaaatgtgatgttaggaatctgaaacttatgggccaagtcattaa |
13455626 |
T |
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| Q |
221 |
cccatggatacgtggagtcggagatgatacaatccggtggatcatt |
266 |
Q |
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| T |
13455627 |
cccatgggtatgcagcgtcggagatgatacaatctgggggatcatt |
13455672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 22 - 268
Target Start/End: Original strand, 13440794 - 13441040
Alignment:
| Q |
22 |
attacctttggtggttttccacacaaggtgatatgatgaggaaaatttggaacaacaaaggaacttgaatccgaatcagaatctgtctgagacataagta |
121 |
Q |
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| T |
13440794 |
attacctttggcggttttccgcacaaggttatacgatgaggaaaatttggaacaacaaaggaacttgaatccaaatcagaattagtatcagaatgaagta |
13440893 |
T |
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| Q |
122 |
aattgtttgttttgagggtttgcacgagggagacagcaaaaaggcacaatccattgaatgtgatgtttgggatctgaaacttatcggccaagtcattaac |
221 |
Q |
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| T |
13440894 |
agttgtttgcttggagggattccacgagagagacggtaaaaagtgacaatccattgaatgtgaggtttgggatctgaagcttatgcgccaagtcattagc |
13440993 |
T |
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| Q |
222 |
ccatggatacgtggagtcggagatgatacaatccggtggatcattct |
268 |
Q |
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| T |
13440994 |
ccatgggtatgcggagtcggagatgatacaatctggtggatctttct |
13441040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 25 - 263
Target Start/End: Complemental strand, 3417112 - 3416880
Alignment:
| Q |
25 |
acctttggtggttttccacacaaggtgatatgatgaggaaaatttggaacaacaaaggaacttgaatccgaatcagaatctgtctgagacataagtaaat |
124 |
Q |
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|||||||||||||| | |||| ||||||| || ||||||| |||||||| | | ||||||||||||||||||||||||| || | |||||||| |
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| T |
3417112 |
acctttggtggtttactgcacatggtgataggaagaggaaagtttggaacgatataggaacttgaatccgaatcagaatccgt------aaaaagtaaat |
3417019 |
T |
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| Q |
125 |
tgtttgttttgagggtttgcacgagggagacagcaaaaaggcacaatccattgaatgtgatgtttgggatctgaaacttatcggccaagtcattaaccca |
224 |
Q |
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| T |
3417018 |
tatttgttctaagggattccatgagcaagactggaaaaacggacaaaacattgtatgtgaaattagggatttgaagcttctgggccaagtcattaaccca |
3416919 |
T |
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| Q |
225 |
tggatacgtggagtcggagatgatacaatccggtggatc |
263 |
Q |
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| T |
3416918 |
tgggtatgcagagtcggagatgatacaatctggtggatc |
3416880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 43 - 104
Target Start/End: Original strand, 12541300 - 12541361
Alignment:
| Q |
43 |
cacaaggtgatatgatgaggaaaatttggaacaacaaaggaacttgaatccgaatcagaatc |
104 |
Q |
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| T |
12541300 |
cacatggtgatacgatgaggaaaatttggaacgacatacgaacttgaatccgaatcagaatc |
12541361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 104
Target Start/End: Complemental strand, 12483041 - 12482964
Alignment:
| Q |
27 |
ctttggtggttttccacacaaggtgatatgatgaggaaaatttggaacaacaaaggaacttgaatccgaatcagaatc |
104 |
Q |
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| T |
12483041 |
ctttggtggttttgtgcacaaggtgatatggtgaggaaaatttggaacaacgaaagaatgtgaatccaaatcggaatc |
12482964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 46 - 85
Target Start/End: Complemental strand, 12589727 - 12589688
Alignment:
| Q |
46 |
aaggtgatatgatgaggaaaatttggaacaacaaaggaac |
85 |
Q |
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| T |
12589727 |
aaggtgatacgatgaggaaaatttggaacaacaaaggaac |
12589688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 104
Target Start/End: Original strand, 48965939 - 48966005
Alignment:
| Q |
38 |
ttccacacaaggtgatatgatgaggaaaatttggaacaacaaaggaacttgaatccgaatcagaatc |
104 |
Q |
| |
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||||| ||||||||||| | ||||| |||||| |||||||||| |||| ||||| ||||||||||| |
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| T |
48965939 |
ttccagacaaggtgatagggtgaggtaaatttcgaacaacaaatgaacccgaatctgaatcagaatc |
48966005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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