View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18157_high_34 (Length: 260)
Name: NF18157_high_34
Description: NF18157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18157_high_34 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 13 - 241
Target Start/End: Complemental strand, 47950 - 47722
Alignment:
| Q |
13 |
gagacaaacgaaaattaactcggtcatcaacacattgaaaaagacacattgattttcaaatcatcttgtcatcacgagctaacaacttaggagacaactg |
112 |
Q |
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| T |
47950 |
gagacaaacgaaaattaactcggccatcaacacattgaaaaagacacattgattttcaaatcatcttgtcatcacgagctaacaacttaggagacaattg |
47851 |
T |
|
| Q |
113 |
ctttgaattgagcccagacctaaccctcagtcgaccttacttgaaggcacatgctagaacgtcacatagccagctcacttaagtatatccttctagtaat |
212 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
47850 |
ctttgaattgggcccagacctaaccctcagtcgaccttacttgaaggcacatgctagaacgtcacatagccagctcacttaagcatatccttctggtaat |
47751 |
T |
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| Q |
213 |
cgatcgttgcatgatcaacatcaacggac |
241 |
Q |
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| T |
47750 |
cgatcgttgcatgatcaacatcaacggac |
47722 |
T |
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