View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18157_high_6 (Length: 680)
Name: NF18157_high_6
Description: NF18157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18157_high_6 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 600; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 600; E-Value: 0
Query Start/End: Original strand, 9 - 680
Target Start/End: Complemental strand, 31282614 - 31281944
Alignment:
| Q |
9 |
gacatcatcattcacgatataaatagatattttagaaattgatactataaagtgacagaaataagtaaatatagtttttatttgtgaaaattttacacga |
108 |
Q |
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| T |
31282614 |
gacatcataattcacgatataaatagatattttagaaattgatactataaagtgacagaaataagtaaatatagtttttatttgtgaaaattttacacga |
31282515 |
T |
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| Q |
109 |
aacatccatgcaaataaaaataaaattgtgctacttggtaaaaataccccttatctcataagcaaaaaagtgaacttatgtctcatcactaaaaagtgaa |
208 |
Q |
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| T |
31282514 |
aacatccatgcaaataaaaataaaattgtgctacttggtaaaaataccccatatctcataagcaaaaaagtgaacttatgtctcatcactaaaaagtgaa |
31282415 |
T |
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| Q |
209 |
cttaaaaacgaaccaataactcctctgtatagtttaaaaataataataataattagtatgtgtagttgcacacgagaatatctttactataaaagaaaaa |
308 |
Q |
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| T |
31282414 |
cttaaaaacgaaccaataactcgtctgtatagttaaaaaaaaaaaaaaaaaataa-tatgtgtagttgcacacgagaatatctttactgtaaaagaaaaa |
31282316 |
T |
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| Q |
309 |
agagaagcaaacttaaaatttacaagttagaaatacgcaagaccaaattacttagcatttaaagtagaaacttcacaagtttcttgagaaaagaagttgg |
408 |
Q |
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| T |
31282315 |
agagaagcaaacttaaaatttacaagttagaaatatgcaagaccaaattacttagcatttaaagtagaaacttcacaagtttcttgagaaaagaagttgg |
31282216 |
T |
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| Q |
409 |
ttgagtaggttggtcatttgtttgattgttggtttctgattgttggtagtttaaacataatggacaatgagaatcatatgatcgacttgagaagcttcaa |
508 |
Q |
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| T |
31282215 |
ttgagtaggttggtcatttgtttgattgttggtttctgattgttggcagtttaaacataatggacaatgagaatcatatgatcgacttgagaagcttcaa |
31282116 |
T |
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| Q |
509 |
ccttcatacatattgtgtcgactatgttgctgttgaaaaacgtgatgatttccatagtgaagagcatttagtggcatgtcgtaccaactagggttgggat |
608 |
Q |
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| T |
31282115 |
ccttcatacatattgtgtcgactatgttgctgttgaaaaacgtgatgatttccatagtgaagagcattttgtggcatgttgtaccaactagggttgggat |
31282016 |
T |
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| Q |
609 |
gaatacgttcataaggataacttgcatgatgataaaatgggtcttgaggagatgaatagttactgttatagc |
680 |
Q |
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| T |
31282015 |
gaatacgttcataaagataacttgcatgatgataaaatgggtcttgaggagatgaatagttattgttatagc |
31281944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 125 - 201
Target Start/End: Complemental strand, 31288014 - 31287938
Alignment:
| Q |
125 |
aaaataaaattgtgctacttggtaaaaataccccttatctcataagcaaaaaagtgaacttatgtctcatcactaaa |
201 |
Q |
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| T |
31288014 |
aaaatcaaattgtgctactttgtaaaaatgccccatatttgataaacaaaaaagtgaatttatgtttcatcactaaa |
31287938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 388 - 446
Target Start/End: Complemental strand, 10247181 - 10247123
Alignment:
| Q |
388 |
tttcttgagaaaagaagttggttgagtaggttggtcatttgtttgattgttggtttctg |
446 |
Q |
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| T |
10247181 |
tttcttcataaaagaagatcgttgagcaggttggtcatttgtttgattattgttttctg |
10247123 |
T |
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