View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18157_high_9 (Length: 622)
Name: NF18157_high_9
Description: NF18157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18157_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 18 - 581
Target Start/End: Original strand, 30431284 - 30431849
Alignment:
| Q |
18 |
cttgtttggagtgtctttaacatcgataagaattctctaaaatgagtaaagagaaatgtaagaaaataaaagattgtatatttagtccnnnnnnnnnnng |
117 |
Q |
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| T |
30431284 |
cttgtttggagtgtctttaacatcgataagaattctctaaaatgagtaaagagaaatgtaagaaaataaaagattgtatatttagtcaaaaaaaaaaaaa |
30431383 |
T |
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| Q |
118 |
attgtctatcgttcataataatacatacattagactatagatcaaccccaccagaaaaaacaactcctat--gtgctcgtggagctcgtggcaagcgtgg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
30431384 |
attgtctatcgttcataataatacatacattagactatagatcaaccccaccagaaaaaacaactcctatatgtgctcgtggagctcgtggcaagcgtgg |
30431483 |
T |
|
| Q |
216 |
ttgatatatagtaatgattgctttttaaaaatgtcttagttagacgtcnnnnnnntggcttcattttaaattggatctcgtggaaaatgagggctgattt |
315 |
Q |
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| T |
30431484 |
ttgatatatagtaatgattgctttttaaaaatgtcttagttagacgtcaaaaaaatgccttcattttaaattggatctcgtggaaaatgagggctgattt |
30431583 |
T |
|
| Q |
316 |
ggtttctgtttttctcttttccctggtgtttgcctaattaaaaatgaaacaaaattgtggtttgtaaattttgtatacattaaagaatgcattcttataa |
415 |
Q |
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||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30431584 |
ggtttctgtttttttcttttccctggtgtttgcttaattaaaaatgaaacaaaattgtggtttgtaaattttgtatacattaaagaatgcattcttataa |
30431683 |
T |
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| Q |
416 |
ttttgaattggattttgttgaaaatgaggatttatttggtttctgttgtttattgacccnnnnnnngcttaattagaaaataaacaaaattgtgatttgt |
515 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
30431684 |
ttttgaattggattttgttgaaaatgaggatttatttggtttctgttgtttattgaccctttttttgcttaattagaaaataaacaaaattgtgatttgt |
30431783 |
T |
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| Q |
516 |
annnnnnnnnnnnnacattaaattgttcttttgtcccatattgattgtcacagtacccaatttgta |
581 |
Q |
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| T |
30431784 |
atctttttatttttccattaaattgttcttttgtcccatattgattatcacagtactcaatttgta |
30431849 |
T |
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