View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18157_low_15 (Length: 561)
Name: NF18157_low_15
Description: NF18157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18157_low_15 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 520; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 6 - 561
Target Start/End: Original strand, 24620117 - 24620669
Alignment:
| Q |
6 |
cagagaccgcaaaatatatatgaaacagataaagcatcagagttaaagaaaattgtatcaaagacaacaatatatcagaagcacaaatattcagaagcaa |
105 |
Q |
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| T |
24620117 |
cagagaccgcaaaatatatatgaaacagataaagcatcagagttaaagaaaattgtatcaaagacaacaatatatcagaagcacaaatattcagaagcaa |
24620216 |
T |
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| Q |
106 |
agataaaacatgataagctaaaatgaaggttgtgcaactaaggttctaaggttgatgttt-cttcttcatcatgtccagaagagccgctatcccgacatt |
204 |
Q |
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| T |
24620217 |
agataaaacatgataagctaaaatgaaggttgtgcaactaaggttctaaggttgatgttttcttcttcatcatgtccagaagagccgctatcccgacatt |
24620316 |
T |
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| Q |
205 |
agtctcttactgtttctttgccatctcttcttgcttccttatcaattcctcttgaatttcactctgtctcttatgttccttcataacttctgataactga |
304 |
Q |
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| T |
24620317 |
agtctcttactgtttctttgccatctcttcttgcttccttatcaattcctcttgaatttcactctgtctcttatgttccttcataacttctgataactga |
24620416 |
T |
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| Q |
305 |
ttcttgagagcttcagaggtcatcttatgttctagcatatcttcttgcagtttctcaatcagcttaacttcttctggatcctcaagatctaacctcttga |
404 |
Q |
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| T |
24620417 |
ttcttgtgagcttcagaggtcatcttatgttctagcatatcttcttgcagtttctcaatcagcttaacttcttctggatcctcaagatctaacctcttga |
24620516 |
T |
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| Q |
405 |
ttaccacgcaccttctcaggtttgatgaacatgttggttatccaggaggtatcaagcccagtcttgacaatctgaggaatctctttggtaggatcatgat |
504 |
Q |
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| T |
24620517 |
ttac----caccttctcaggtttgatgaacatgttggttatccaggaggtatcaagcccagtcttgacaatctgaggaatctctttggtaggatcatgat |
24620612 |
T |
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| Q |
505 |
agtgaggagtgtctgacggttgcttgaaggatttcttgagctcaacagcttccatac |
561 |
Q |
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| T |
24620613 |
agtgaggagtgtctgacagttgcttgaaggatttcttgagctcaacaacttccatac |
24620669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 343 - 473
Target Start/End: Complemental strand, 11571163 - 11571037
Alignment:
| Q |
343 |
atcttcttgcagtttctcaatcagcttaacttcttctggatcctcaagatctaacctcttgattaccacgcaccttctcaggtttgatgaacatgttggt |
442 |
Q |
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| T |
11571163 |
atcttcttacagcttttcaatcagcttcacttcttcaggatcttcaagatcgagactcttgattac----aaccttctatgttttaatgaacatgctagt |
11571068 |
T |
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| Q |
443 |
tatccaggaggtatcaagcccagtcttgaca |
473 |
Q |
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| T |
11571067 |
gatccaggaagtatgaaggccagtcttgaca |
11571037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 125 - 177
Target Start/End: Complemental strand, 24497321 - 24497269
Alignment:
| Q |
125 |
aaaatgaaggttgtgcaactaaggttctaaggttgatgtttcttcttcatcat |
177 |
Q |
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| T |
24497321 |
aaaatcaagggtgtgcaactaagggtctaaggttgttgttgtttcttcatcat |
24497269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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