View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18157_low_16 (Length: 540)
Name: NF18157_low_16
Description: NF18157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18157_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 176; Significance: 1e-94; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 49 - 248
Target Start/End: Original strand, 35678669 - 35678868
Alignment:
| Q |
49 |
taactcattccgacccttcaattttgagaggaactagacaattcattgtaataaattgacttatttgtccttcgtatgtaaaggttagagactactttga |
148 |
Q |
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| T |
35678669 |
taactcattctgaccctttaattttgagaggaactagacaattcattgtaataaatggacttatttgtccttcgtgtgtaaaagttagagactactttga |
35678768 |
T |
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| Q |
149 |
gtttcaattttgttttatagattaaattgggtcacgagaaaattgtgaaggactaaattggatcttcactctaaaatatatcatatgaaatggaatcaac |
248 |
Q |
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| T |
35678769 |
gtttcaattttgtcttatagattaaattgggtcacgagaaaattgtgaaggactaaattggatcttcactctaaaatatatcatatgaaatggaatcaac |
35678868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 319 - 522
Target Start/End: Original strand, 35678930 - 35679133
Alignment:
| Q |
319 |
gagggttttgtattatcaaatcattaattttcaaggataaatattatggagattgtgtttcaacttacaacaagggtttttcttcaattcaaagagtatg |
418 |
Q |
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| T |
35678930 |
gaggtttttgtattatcaaatcattaattttcaaggataaatattatgaggattgtgtttcaactttcaacaagggctcttcttcaatccaaaaagtatg |
35679029 |
T |
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| Q |
419 |
ttgtcctataacttacattaggtgcacgcaagaggccaaaacagattatcattgttgcttccttacatcacctaagtcttattcttgttggtgaagattg |
518 |
Q |
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| T |
35679030 |
ttgtcctatgactcacattaggtgcacacaagaggccaaaacaggttatcattgctgcttccttacatcccctaactcttattcttgttggtgaagattg |
35679129 |
T |
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| Q |
519 |
agtt |
522 |
Q |
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| T |
35679130 |
agtt |
35679133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 220
Target Start/End: Complemental strand, 21206863 - 21206812
Alignment:
| Q |
169 |
attaaattgggtcacgagaaaattgtgaaggactaaattggatcttcactct |
220 |
Q |
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| T |
21206863 |
attaaattgggccacgggaaaactgtgaaggactaaattgagtcttcactct |
21206812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 39411095 - 39411047
Alignment:
| Q |
171 |
taaattgggtcacgagaaaattgtgaaggactaaattggatcttcactc |
219 |
Q |
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| T |
39411095 |
taaattgggttgcgagaaaattgtgaaggcttaaattggatctttactc |
39411047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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