View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18157_low_17 (Length: 537)
Name: NF18157_low_17
Description: NF18157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18157_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 495; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 19 - 525
Target Start/End: Complemental strand, 34338251 - 34337745
Alignment:
| Q |
19 |
taatggactgtagtcattcatcacaccgtttatagcctgttattcgttaaactaggaaatgtgtgctatatatttgaaaaactccatgtcatctaataag |
118 |
Q |
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| T |
34338251 |
taatggactgtagtcattcatcacaccttttatagcctgttattcgttaaactaggaaatgtgtgctatatatttgaaaaactccatgtcatctaataag |
34338152 |
T |
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| Q |
119 |
cagtttatattgatgtctatctcaacaattttgcagatcagaagaggacatgctgaggtcaggaaccttaactattaaagctgtgttcctttatttattt |
218 |
Q |
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| T |
34338151 |
cagtttatattgatgtctatctcaacaattttgcagatcagaagaggacatgctgaggtcaggaaacttaactattaaagctgtgttcctttatttattt |
34338052 |
T |
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| Q |
219 |
tacttttgattatcattagcaacttaaaatcccttcaccagattcacctttatgagagttagcagtaaaagatattttattctagttgcacaaagtggta |
318 |
Q |
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| T |
34338051 |
tacttttgattatcattagcaagttaaaatcccttcaccagattcacctttatgagagttagcagtaaaagatattttattctagttgcacaaagtggta |
34337952 |
T |
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| Q |
319 |
ttcatgcataccgcgaagagtttgaaatcttttatgatttgtagggcctcaatcctttgatgtttctctttgctttaattgggaacgctacttatgttgc |
418 |
Q |
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| T |
34337951 |
ttcatgcataccgcgaagagtttgaaatcttttatgatttgtagggcctcaatcctttgatgtttctctttgctttaattgggaacgctacttatgttgc |
34337852 |
T |
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| Q |
419 |
aaggtatgcatctgcttcatactatcttctctgtttaaagttttggcaccaaagtgacttttgccaaaatgtagctaaggtgtgatattatcacttgtat |
518 |
Q |
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| T |
34337851 |
aaggtatgcatctgcttcatactatcttctctgtttaaagttttggcaccaaagtgacttttgccaaaatgtagctaaggtgtgatattatcacttgtat |
34337752 |
T |
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| Q |
519 |
ttaatga |
525 |
Q |
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| T |
34337751 |
ttaatga |
34337745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 369 - 427
Target Start/End: Complemental strand, 9072241 - 9072183
Alignment:
| Q |
369 |
aatcctttgatgtttctctttgctttaattgggaacgctacttatgttgcaaggtatgc |
427 |
Q |
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| T |
9072241 |
aatcctctaatgtttctctttgctttaattgggaatactacttatgtagcaaggtatgc |
9072183 |
T |
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