View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18157_low_18 (Length: 518)
Name: NF18157_low_18
Description: NF18157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18157_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 207 - 502
Target Start/End: Complemental strand, 32156930 - 32156635
Alignment:
| Q |
207 |
agagaagatgttatttgaagtttttgaaaatgtatttgaaaaaacagattgaatattttttgcaatatgtgcatatagaacattatgaagcttattattt |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32156930 |
agagaagatgttatttgaagtttttgaaaatgtatttgaaaaaacagattgaatattttttgcaatatgtgcatatagaacattatgaagcttattattt |
32156831 |
T |
|
| Q |
307 |
ctcctaggttgttgtcacatctggaaagaatgtcatagaagtgcaaccacaatttgatgcaattgtaaaatctcctggaagggggataattgttacaggg |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32156830 |
ctcctaggttgttgtcacatctggaaagaatgtcatagaagtgcaaccacaatttgatgcaattgtaaaatctcctggaagggggataattgttacaggg |
32156731 |
T |
|
| Q |
407 |
atcgctcctccagagtcgggatttgatttctacagtcgatttttctgcccaaaatttggagtaaacgaggttgaactatgattatataatcttctt |
502 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
32156730 |
atcgctcctccagagtcgggatttgatttctacagtcgatttttctgcccaaaatttggagtaaatgaggttgaactatgattatataatcttctt |
32156635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 6 - 199
Target Start/End: Complemental strand, 32157170 - 32156977
Alignment:
| Q |
6 |
agtgagaagaagaatttgcaaaatggtaaagctaaggatgtatcttatattgaattggattttcctgctgaccctatcacagagttcaaattcgacgaca |
105 |
Q |
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||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32157170 |
agtgataagaagaatttgcaaaatggtaaagccaaggatgtatcttatattgaattggattttcctgctgaccctatcacagagttcaaattcgacgaca |
32157071 |
T |
|
| Q |
106 |
cttcgatcatttctcaagcattggatggagcttccataattgatataaagaggacacagattcaagatgacttacttgtaattcctaataattc |
199 |
Q |
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| T |
32157070 |
cttggctcatttctcaagcattggatggagcttccataattgatataaagaggacacaaattcaagatgacttacttgtaattcctaataattc |
32156977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 305 - 456
Target Start/End: Complemental strand, 32167269 - 32167118
Alignment:
| Q |
305 |
ttctcctaggttgttgtcacatctggaaagaatgtcatagaagtgcaaccacaatttgatgcaattgtaaaatctcctggaagggggataattgttacag |
404 |
Q |
| |
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|||||||||||| |||||||||||||| | ||||||| |||||| ||||||||||||||||||||||| |||| ||| || | ||||||||||||||||| |
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| T |
32167269 |
ttctcctaggttcttgtcacatctggagaaaatgtcacagaagtacaaccacaatttgatgcaattgttaaatgtcccgggatggggataattgttacag |
32167170 |
T |
|
| Q |
405 |
ggatcgctcctccagagtcgggatttgatttctacagtcgatttttctgccc |
456 |
Q |
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||||||||||||||||||| |||||||| ||||||||||||| ||||||||| |
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|
| T |
32167169 |
ggatcgctcctccagagtccggatttgacttctacagtcgatatttctgccc |
32167118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 290 - 466
Target Start/End: Complemental strand, 27321662 - 27321486
Alignment:
| Q |
290 |
tatgaagcttattatttctcctaggttgttgtcacatctggaaagaatgtcatagaagtgcaaccacaatttgatgcaattgtaaaatctcctggaaggg |
389 |
Q |
| |
|
||||||||| ||||||| || ||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||| | | |||| ||||||||| |
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| T |
27321662 |
tatgaagctcattatttatcataggttgttgtcacatctggaaaaaatgtcttagaagtacaaccacaatttgatgcactagctaaattatctggaaggg |
27321563 |
T |
|
| Q |
390 |
ggataattgttacagggatcgctcctccagagtcgggatttgatttctacagtcgatttttctgcccaaaatttgga |
466 |
Q |
| |
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| ||| |||||||||||| || ||||| ||||| |||||||| |||||||||||||| |||| ||||||||||||| |
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|
| T |
27321562 |
gagtaagtgttacagggattgcgcctcctgagtccggatttgacttctacagtcgattcttctccccaaaatttgga |
27321486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 294 - 466
Target Start/End: Complemental strand, 32164609 - 32164437
Alignment:
| Q |
294 |
aagcttattatttctcctaggttgttgtcacatctggaaagaatgtcatagaagtgcaaccacaatttgatgcaattgtaaaatctcctggaagggggat |
393 |
Q |
| |
|
||||||||||||||| ||||||||| ||| |||||||||| ||||||| |||| | || |||||| | |||||||||| |||| ||||||||||| | |
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| T |
32164609 |
aagcttattatttcttctaggttgtggtcgcatctggaaaaaatgtcacagaaatacagccacaactggatgcaattgctaaattacctggaaggggatt |
32164510 |
T |
|
| Q |
394 |
aattgttacagggatcgctcctccagagtcgggatttgatttctacagtcgatttttctgcccaaaatttgga |
466 |
Q |
| |
|
||||||||| ||||| |||||||||||||| |||||||| |||||||||||||| ||| ||||||||||||| |
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| T |
32164509 |
aattgttaccgggattgctcctccagagtctggatttgacttctacagtcgattcttcgccccaaaatttgga |
32164437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 290 - 477
Target Start/End: Complemental strand, 27347611 - 27347424
Alignment:
| Q |
290 |
tatgaagcttattatttctcctaggttgttgtcacatctggaaagaatgtcatagaagtgcaaccacaatttgatgcaattgtaaaatctcctggaaggg |
389 |
Q |
| |
|
||||||||| |||||||||| ||||||||| ||||||||||||| | |||| ||||||| ||| |||||||||||||| | | |||| ||||||||| |
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|
| T |
27347611 |
tatgaagctcattatttctcttaggttgttctcacatctggaaaaattgtcttagaagtacaagcacaatttgatgcactagctaaattatctggaaggg |
27347512 |
T |
|
| Q |
390 |
ggataattgttacagggatcgctcctccagagtcgggatttgatttctacagtcgatttttctgcccaaaatttggagtaaacgaggt |
477 |
Q |
| |
|
| ||| |||||||||||| || ||||| ||||| |||||||| |||||||||||||| |||| |||||| |||||| | |||||||| |
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| T |
27347511 |
gagtaagtgttacagggattgcacctcctgagtcaggatttgacttctacagtcgattcttctccccaaagtttggaatcaacgaggt |
27347424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 302 - 466
Target Start/End: Complemental strand, 27262595 - 27262431
Alignment:
| Q |
302 |
tatttctcctaggttgttgtcacatctggaaagaatgtcatagaagtgcaaccacaatttgatgcaattgtaaaatctcctggaagggggataattgtta |
401 |
Q |
| |
|
|||||| | ||||||||| |||||||||||| |||||| ||||||| |||||||| ||||||||| | | |||| |||||||||| ||| ||||| |
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|
| T |
27262595 |
tatttcacttaggttgttctcacatctggaacaaatgtcttagaagtacaaccacattttgatgcactagctaaattatctggaaggggagtaagtgtta |
27262496 |
T |
|
| Q |
402 |
cagggatcgctcctccagagtcgggatttgatttctacagtcgatttttctgcccaaaatttgga |
466 |
Q |
| |
|
||||||| | ||||| || ||||||||||| |||||||||||||| |||| ||||||||||||| |
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|
| T |
27262495 |
cagggattgtgcctcctgattcgggatttgacttctacagtcgattcttctccccaaaatttgga |
27262431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 51 - 194
Target Start/End: Original strand, 27359355 - 27359498
Alignment:
| Q |
51 |
tatattgaattggattttcctgctgaccctatcacagagttcaaattcgacgacacttcgatcatttctcaagcattggatggagcttccataattgata |
150 |
Q |
| |
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||||| |||||||||||||| | |||||||| || || |||| || || || ||||| |||||||| ||||||||| ||| ||||| |||||||||| |
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| T |
27359355 |
tatatagaattggattttccagtggaccctattactgaactcaattttgatgatacttcactcatttctgaagcattgggtggtgcttctataattgata |
27359454 |
T |
|
| Q |
151 |
taaagaggacacagattcaagatgacttacttgtaattcctaat |
194 |
Q |
| |
|
|||||||||||| |||||||||| || ||||||||||||||||| |
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|
| T |
27359455 |
taaagaggacactgattcaagataacatacttgtaattcctaat |
27359498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 17 - 161
Target Start/End: Complemental strand, 32167781 - 32167637
Alignment:
| Q |
17 |
gaatttgcaaaatggtaaagctaaggatgtatcttatattgaattggattttcctgctgaccctatcacagagttcaaattcgacgacacttcgatcatt |
116 |
Q |
| |
|
||||||||| || ||| ||||| || || || ||||||||||||||||||||||||||||||||| |||| ||||| | | |||||||| ||||| |
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| T |
32167781 |
gaatttgcagaacggtgaagctccggttggattttatattgaattggattttcctgctgaccctattgcagaattcaattctaatgacacttcactcatt |
32167682 |
T |
|
| Q |
117 |
tctcaagcattggatggagcttccataattgatataaagaggaca |
161 |
Q |
| |
|
||| ||||||| |||| |||||||| |||||||||||||||||| |
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|
| T |
32167681 |
tctggagcattgaatggtgcttccattattgatataaagaggaca |
32167637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 298 - 477
Target Start/End: Original strand, 27360250 - 27360429
Alignment:
| Q |
298 |
ttattatttctcctaggttgttgtcacatctggaaagaatgtcatagaagtgcaaccacaatttgatgcaa-ttgtaaaatctcctggaagggggataat |
396 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||||||||||| || | | || |||||||||||||||| ||| | ||| || ||||||| ||| |
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|
| T |
27360250 |
ttattatttctcttaggttgtggtcacatctggaaagaatgtcaaagcaatacatccacaatttgatgcaatttgcagaat-acccagaaggggagtaag |
27360348 |
T |
|
| Q |
397 |
tgttacagggatcgctcctccagagtcgggatttgatttctacagtcgatttttctgcccaaaatttggagtaaacgaggt |
477 |
Q |
| |
|
||| ||||||| || ||| | ||||| ||||||||||||||||||||||| || ||||||| ||||||| || ||||| |
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|
| T |
27360349 |
tgtatcagggattgcgccttctgagtcaggatttgatttctacagtcgattctttgccccaaaaattggagtcaatgaggt |
27360429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 123 - 191
Target Start/End: Complemental strand, 27348539 - 27348471
Alignment:
| Q |
123 |
gcattggatggagcttccataattgatataaagaggacacagattcaagatgacttacttgtaattcct |
191 |
Q |
| |
|
|||||| |||| |||||||| |||||||| ||||||||| | || |||||| ||||||||||||||| |
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|
| T |
27348539 |
gcattgaatggtgcttccattattgatatgaagaggacagaatttgcagatgatttacttgtaattcct |
27348471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 274 - 466
Target Start/End: Original strand, 44291521 - 44291713
Alignment:
| Q |
274 |
tgtgcatatagaacattatgaagcttattatttctcctaggttgttgtcacatctggaaagaatgtcatagaagtgcaaccacaatttgatgcaattgta |
373 |
Q |
| |
|
||||||||| ||||||| |||||||||||||| | ||||||||| || |||| | ||||||||| | |||||| |||||||| |||||||||||| |
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|
| T |
44291521 |
tgtgcatatccaacattaagaagcttattatttgttctaggttgtggttgcatccgcaaagaatgtgacagaagtacaaccacattttgatgcaatttat |
44291620 |
T |
|
| Q |
374 |
aaatctcctggaagggggataattgttacagggatcgctcctccagagtcgggatttgatttctacagtcgatttttctgcccaaaatttgga |
466 |
Q |
| |
|
|||| |||| |||||| ||| |||| |||| | || ||||| ||||| |||||||| |||||||| ||||| ||||| |||||| ||||| |
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|
| T |
44291621 |
aaattacctgtaaggggagtaagtgtttcaggagttgcacctcctgagtctggatttgacttctacagccgattcttctgtccaaaaattgga |
44291713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 34 - 192
Target Start/End: Original strand, 44291283 - 44291441
Alignment:
| Q |
34 |
aagctaaggatgtatcttatattgaattggattttcctgctgaccctatcacagagttcaaattcgacgacacttcgatcatttctcaagcattggatgg |
133 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||||||||||||||| || |||| | ||||| || || | ||| | |||||| || |||| || |
|
|
| T |
44291283 |
aagctaaggatgtattttatgttgaattggattttcctgctgacccaatttcagaactaaaatttgatgatatttcacttatttctggagtattgagtga |
44291382 |
T |
|
| Q |
134 |
agcttccataattgatataaagaggacacagattcaagatgacttacttgtaattccta |
192 |
Q |
| |
|
|||||||| ||||| | ||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
44291383 |
ggcttccattgttgatgtgaagaggacagagattcaagatgacttgattgtaattccta |
44291441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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