View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18157_low_2 (Length: 917)
Name: NF18157_low_2
Description: NF18157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18157_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 833; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 833; E-Value: 0
Query Start/End: Original strand, 9 - 902
Target Start/End: Complemental strand, 36677165 - 36676281
Alignment:
| Q |
9 |
gaaatgaatcaaactcaaaggaccgcatatgctaaaataaaataatagagtgatattgactaaaattgctttgattttatctaacaaccatcattcaatt |
108 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36677165 |
gaaatgaatcaaacttaaaggaccgcatatgctaaaataaaataatagagtgatattgactaaaattgctttgattttatctaacaaccatcattcaatt |
36677066 |
T |
|
| Q |
109 |
aaccgtgtaaagttaatgatctatatacatttaatggaatttcacgtgcaaaaatcactgtccattgttgtatccttgaacaaggcctttataagcccaa |
208 |
Q |
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| T |
36677065 |
aaccgtgtaaagttaatgatctatatacatttaatggaatttcacgtgcaaaaatcactgtccattgttatatccttgaacaaggcctttataagcccaa |
36676966 |
T |
|
| Q |
209 |
aaatacttaacattttattcatcatcatcttccactttccctcgaaggatagaaataaaattgattgattgttatgtgtttacctgaagaggaaagagat |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36676965 |
aaatacttaacattttattcatcatcatcttccactttccctcgaaggatagaaataaaattgattgattgttatgtgtttacctgaagaggaaagagat |
36676866 |
T |
|
| Q |
309 |
agagtgaaagacatggcactagaagcagtggtttatccacaaacacaagatccttttagttatggaatcaaagatttttacaacttcaacttcaacactc |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36676865 |
agagtgaaagacatggcactagaagcagtggtttatccacaaacacaagatccttttagttatggaatcaaagatttttacaacttcaacttcaacactc |
36676766 |
T |
|
| Q |
409 |
tagttgcaaaagaacaagaacaagaacaagaacatagatctttcagttttgtagaaaaccaaacagaaaataattgttctccttatgtagattggaataa |
508 |
Q |
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| T |
36676765 |
ttgttgcaaaagaacaagaacaagaaca------tagatctttcagttttgtagaaaaccaaacagaaaataattgtcctccttatgtagattggaataa |
36676672 |
T |
|
| Q |
509 |
caacaatagttccactttttcaccaccccatttgaatgaagttcaagaaaccactactgatccaagtagtaatactaataacactcaaaactttcatgct |
608 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
36676671 |
caacaatagttccactttttcaccaccccatttgaatgaagttcaagaaaccactactgacccaagtagtaatactaataacactcaaaactttcatgct |
36676572 |
T |
|
| Q |
609 |
tcaccttctgtgaacacagttattcgtccgaaaaggcgaagagctagaagcaggaaaaacaaagaagaaattgagaatcagagaatgactcacattgctg |
708 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36676571 |
tcaccttctgtgaacacagttattcgtccaaaaaggcgaagagctagaagcaggaaaaacaaagaagaaattgagaatcagagaatgactcacattgctg |
36676472 |
T |
|
| Q |
709 |
ttgagcgtaatagaagaaagcagatgaatgagtatctttctattcttcgctctctaatgccagattctcacatccaaagggtacttactacttactactt |
808 |
Q |
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| T |
36676471 |
ttgagcgtaatagaagaaagcagatgaatgagtatctttctattcttcgctctctaatgccagattctcacatccaaagggtacttactacttactactt |
36676372 |
T |
|
| Q |
809 |
acataacatcacttacaatattatatgtttagattaacgatgagtttcgtagaatcacggtgtgtcactttgattttaaactcatcgtgattat |
902 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36676371 |
acataacatcacttacaa---tatatgtttagattaacgatgagtttcgtagaatcacggtgtgtcactttgattttaaactcatcgtgattat |
36676281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 2e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 672 - 794
Target Start/End: Original strand, 46921817 - 46921939
Alignment:
| Q |
672 |
gaagaaattgagaatcagagaatgactcacattgctgttgagcgtaatagaagaaagcagatgaatgagtatctttctattcttcgctctctaatgccag |
771 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| || || || || |||||||| |||||||||||||| ||| ||||| | ||||| ||||| | |
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| T |
46921817 |
gaagaaattgagaatcagagaatgactcacattgctgtagaacgcaacaggagaaagcaaatgaatgagtatctctctgttcttagatctctcatgcctg |
46921916 |
T |
|
| Q |
772 |
attctcacatccaaagggtactt |
794 |
Q |
| |
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| || || |||||||||||||| |
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| T |
46921917 |
aatcctacgtccaaagggtactt |
46921939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 662 - 742
Target Start/End: Complemental strand, 27301008 - 27300928
Alignment:
| Q |
662 |
gaaaaacaaagaagaaattgagaatcagagaatgactcacattgctgttgagcgtaatagaagaaagcagatgaatgagta |
742 |
Q |
| |
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||||||||| || ||||| |||| ||||| |||||||||||||| |||||||| ||| ||||||| |||||||||||||| |
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| T |
27301008 |
gaaaaacaaggaggaaatcgagagccagaggatgactcacattgcagttgagcgcaatcgaagaaaacagatgaatgagta |
27300928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 679 - 721
Target Start/End: Complemental strand, 8873385 - 8873343
Alignment:
| Q |
679 |
ttgagaatcagagaatgactcacattgctgttgagcgtaatag |
721 |
Q |
| |
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|||||||||| |||||||| |||||||||||||| |||||||| |
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| T |
8873385 |
ttgagaatcaaagaatgacacacattgctgttgaacgtaatag |
8873343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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