View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18157_low_20 (Length: 494)

Name: NF18157_low_20
Description: NF18157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18157_low_20
NF18157_low_20
[»] chr3 (4 HSPs)
chr3 (353-445)||(19655099-19655191)
chr3 (353-446)||(54416574-54416668)
chr3 (365-452)||(1277746-1277835)
chr3 (93-146)||(10863189-10863242)
[»] chr6 (2 HSPs)
chr6 (365-452)||(31441050-31441137)
chr6 (86-145)||(5239347-5239406)
[»] chr2 (6 HSPs)
chr2 (368-452)||(20139415-20139501)
chr2 (384-445)||(27128093-27128154)
chr2 (365-444)||(2211645-2211723)
chr2 (365-409)||(18087016-18087060)
chr2 (264-306)||(2211746-2211788)
chr2 (275-304)||(20139360-20139389)
[»] chr7 (1 HSPs)
chr7 (365-445)||(30070655-30070733)
[»] chr4 (4 HSPs)
chr4 (18-146)||(8569183-8569313)
chr4 (18-146)||(46449874-46450004)
chr4 (386-452)||(22280704-22280771)
chr4 (269-306)||(9834001-9834038)
[»] chr8 (2 HSPs)
chr8 (15-146)||(17602717-17602850)
chr8 (15-49)||(17607428-17607462)
[»] chr5 (1 HSPs)
chr5 (18-135)||(39897163-39897282)
[»] scaffold0256 (1 HSPs)
scaffold0256 (23-164)||(15123-15267)
[»] scaffold0012 (1 HSPs)
scaffold0012 (17-146)||(165538-165670)


Alignment Details
Target: chr3 (Bit Score: 61; Significance: 6e-26; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 353 - 445
Target Start/End: Original strand, 19655099 - 19655191
Alignment:
Q  353 caagaacattacttaattgttttaatactttttagcattatttgaatactgaaaatagaaattgtataaaaataacaaataagtaaaataaac 445  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||  ||| |||||||| |||||||||||| ||||||||    
T  19655099 caagaatattacttaactgttttaatactttttagcattatttgaatattgaaaataataatggtataaaactaacaaataagttaaataaac 19655191  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 353 - 446
Target Start/End: Complemental strand, 54416668 - 54416574
Alignment:
Q  353 caagaacattacttaattgtttt-aatactttttagcattatttgaatactgaaaatagaaattgtataaaaataacaaataagtaaaataaact 446  Q
    |||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||| |||| |||||||| ||| ||| |||| ||| |||||    
T  54416668 caagaatattacttaattttttttaatactttttagcattatttgaatactgaaaataaaaatggtataaaattaataaacaagtgaaacaaact 54416574  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 365 - 452
Target Start/End: Original strand, 1277746 - 1277835
Alignment:
Q  365 ttaattgttttaatacttttt--agcattatttgaatactgaaaatagaaattgtataaaaataacaaataagtaaaataaactccttac 452  Q
    ||||||||||||||| |||||  |  |||||||||||| |||||||| |||| |||||||| ||| ||| |||| | ||||||| |||||    
T  1277746 ttaattgttttaatattttttttaatattatttgaatattgaaaataaaaatggtataaaattaataaacaagtgacataaactacttac 1277835  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 146
Target Start/End: Complemental strand, 10863242 - 10863189
Alignment:
Q  93 taaataattacaattagtaagaataaatcaatttttgatttatgtccttatttc 146  Q
    |||||||||||| ||| | |||| |||||||||| |||||| ||||||||||||    
T  10863242 taaataattacatttaatgagaacaaatcaatttatgatttgtgtccttatttc 10863189  T

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Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 365 - 452
Target Start/End: Original strand, 31441050 - 31441137
Alignment:
Q  365 ttaattgttttaatactttttagcattatttgaatactgaaaatagaaattgtataaaaataacaaataagtaaaataaactccttac 452  Q
    ||||||||||||||| |||||| |||||||||| || |||||||| |||| |||||||| |||||||||||| | ||||||| |||||    
T  31441050 ttaattgttttaatattttttaacattatttgagtattgaaaataaaaatggtataaaattaacaaataagtgacataaactacttac 31441137  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 86 - 145
Target Start/End: Complemental strand, 5239406 - 5239347
Alignment:
Q  86 attacaataaataattacaattagtaagaataaatcaatttttgatttatgtccttattt 145  Q
    |||||| |||||||||||| ||| | |||| ||| ||||||||||||| |||||||||||    
T  5239406 attacactaaataattacatttaatgagaacaaaccaatttttgatttgtgtccttattt 5239347  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 368 - 452
Target Start/End: Original strand, 20139415 - 20139501
Alignment:
Q  368 attgttttaatacttt-ttagcattatttgaatactgaaaat-agaaattgtataaaaataacaaataagtaaaataaactccttac 452  Q
    |||||||||||| ||| ||||||||||||||||||||||||| | |||| |||||||| ||||||||||||  |||||||| |||||    
T  20139415 attgttttaatattttattagcattatttgaatactgaaaataaaaaatggtataaaattaacaaataagttgaataaactacttac 20139501  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 384 - 445
Target Start/End: Original strand, 27128093 - 27128154
Alignment:
Q  384 ttagcattatttgaatactgaaaatagaaattgtataaaaataacaaataagtaaaataaac 445  Q
    ||||||||||||||||| |||||||| |||| |||||||| ||||||||| || ||||||||    
T  27128093 ttagcattatttgaatattgaaaataaaaatggtataaaattaacaaatacgtgaaataaac 27128154  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 365 - 444
Target Start/End: Complemental strand, 2211723 - 2211645
Alignment:
Q  365 ttaattgttttaatactttttagcattatttgaatactgaaaat-agaaattgtataaaaataacaaataagtaaaataaa 444  Q
    ||||||||||||||| |||||||||||||||||||||| ||||| | |||| |||| ||| |||||||| |||||||||||    
T  2211723 ttaattgttttaata-tttttagcattatttgaatactaaaaataaaaaatggtat-aaattaacaaattagtaaaataaa 2211645  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 365 - 409
Target Start/End: Original strand, 18087016 - 18087060
Alignment:
Q  365 ttaattgttttaatactttttagcattatttgaatactgaaaata 409  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||    
T  18087016 ttaattgttttaatattttttaacattatttgaatactgaaaata 18087060  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 306
Target Start/End: Complemental strand, 2211788 - 2211746
Alignment:
Q  264 gaatgtttgttttattgattttgctttcaatttagaatataag 306  Q
    ||||||||||| ||||||||||||||||| |||| ||||||||    
T  2211788 gaatgtttgttgtattgattttgctttcactttaaaatataag 2211746  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 304
Target Start/End: Original strand, 20139360 - 20139389
Alignment:
Q  275 ttattgattttgctttcaatttagaatata 304  Q
    ||||||||||||||||||||||||||||||    
T  20139360 ttattgattttgctttcaatttagaatata 20139389  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 365 - 445
Target Start/End: Complemental strand, 30070733 - 30070655
Alignment:
Q  365 ttaattgttttaatactttttagcattatttgaatactgaaaatagaaattgtataaaaataacaaataagtaaaataaac 445  Q
    ||||||||||||||  |||||| |||||||| |||| |||||||| |||| |||||||| |||||||||||| ||||||||    
T  30070733 ttaattgttttaat--tttttaacattatttaaatattgaaaataaaaatggtataaaattaacaaataagtgaaataaac 30070655  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 146
Target Start/End: Original strand, 8569183 - 8569313
Alignment:
Q  18 aatattggcttgattcctttctcattgttatttct---gtatatacaaaggttagaaggctatgcatgaaaattacaataaataattacaattagtaaga 114  Q
    |||| ||||||||| ||||||||||||||||| ||   ||||||| | |||||| |||||||| ||| | ||||||| || |||||||||  || |   |    
T  8569183 aataatggcttgatgcctttctcattgttattccttgtgtatatatagaggttacaaggctatacat-ataattacactacataattacatataatggaa 8569281  T
Q  115 ataaatcaatttttgatttatgtccttatttc 146  Q
    | ||||||||||||||||||||||||||||||    
T  8569282 acaaatcaatttttgatttatgtccttatttc 8569313  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 146
Target Start/End: Original strand, 46449874 - 46450004
Alignment:
Q  18 aatattggcttgattcctttctcattgttat---ttctgtatatacaaaggttagaaggctatgcatgaaaattacaataaataattacaattagtaaga 114  Q
    |||| ||||||||| ||||||||||||||||   || |||||||| | |||||| |||||||| ||| | ||||||| ||||||||||||  || |   |    
T  46449874 aataatggcttgatgcctttctcattgttattccttgtgtatatatagaggttacaaggctatccat-ataattacactaaataattacatataatggaa 46449972  T
Q  115 ataaatcaatttttgatttatgtccttatttc 146  Q
    | |||||||||| || ||||||||||||||||    
T  46449973 acaaatcaatttctggtttatgtccttatttc 46450004  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 386 - 452
Target Start/End: Original strand, 22280704 - 22280771
Alignment:
Q  386 agcattatttgaatactgaaaa-tagaaattgtataaaaataacaaataagtaaaataaactccttac 452  Q
    ||||||||||||||||| |||| || |||| |||||||| |||||||||||| ||||||||| |||||    
T  22280704 agcattatttgaatacttaaaaataaaaatggtataaaattaacaaataagtgaaataaactacttac 22280771  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 269 - 306
Target Start/End: Original strand, 9834001 - 9834038
Alignment:
Q  269 tttgttttattgattttgctttcaatttagaatataag 306  Q
    |||||| |||||||||||||||||||||||||||||||    
T  9834001 tttgttatattgattttgctttcaatttagaatataag 9834038  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 15 - 146
Target Start/End: Original strand, 17602717 - 17602850
Alignment:
Q  15 atgaatattggcttgattcctttctcattgtta---tttctgtatatacaaaggttagaaggctatgcatgaaaattacaataaataattacaattagta 111  Q
    ||||||||||||||||| |||||||||||||||   ||| |||||||| | |||||| |||||||| ||| | ||||||| |||||||||||   || |     
T  17602717 atgaatattggcttgatgcctttctcattgttattctttatgtatataaagaggttacaaggctatccat-ataattacactaaataattacttatattg 17602815  T
Q  112 agaataaatcaatttttgatttatgtccttatttc 146  Q
      || |||||||||| ||||||| |||||||||||    
T  17602816 gaaacaaatcaatttctgatttaggtccttatttc 17602850  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 49
Target Start/End: Original strand, 17607428 - 17607462
Alignment:
Q  15 atgaatattggcttgattcctttctcattgttatt 49  Q
    ||||||||||||||||| |||||||||||||||||    
T  17607428 atgaatattggcttgatgcctttctcattgttatt 17607462  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 135
Target Start/End: Original strand, 39897163 - 39897282
Alignment:
Q  18 aatattggcttgattcctttctcattgttat---ttctgtatatacaaaggttagaaggctatgcatgaaaattacaataaataattacaattagtaaga 114  Q
    |||| ||||||||| ||||||||||||||||   || |||||||| | |||||| |||||||| ||| | ||||||| |||||||||||||||| |   |    
T  39897163 aataatggcttgatgcctttctcattgttattccttgtgtatatatagaggttacaaggctatacat-ataattacactaaataattacaattattggaa 39897261  T
Q  115 ataaatcaatttttgatttat 135  Q
    | |||||||||| ||||||||    
T  39897262 acaaatcaatttctgatttat 39897282  T

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Target: scaffold0256 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 23 - 164
Target Start/End: Original strand, 15123 - 15267
Alignment:
Q  23 tggcttgattcctttctcattgttat---ttctgtatatacaaaggttagaaggctatgcatgaaaattacaataaataattacaattagtaagaataaa 119  Q
    ||||||||| ||||||||||||||||   || |||||||| | |||||| |||||||| ||| | ||||||| ||||||||||||  || |   || |||    
T  15123 tggcttgatacctttctcattgttattccttgtgtatatatagaggttacaaggctatacat-ataattacactaaataattacatataatggaaacaaa 15221  T
Q  120 tcaatttttgatttatgt-ccttatttcatggaataagctactaaa 164  Q
    ||||||| | |||||||| |||||||||  ||||||||||| ||||    
T  15222 tcaatttctaatttatgtcccttatttctaggaataagctaataaa 15267  T

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Target: scaffold0012 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 17 - 146
Target Start/End: Complemental strand, 165670 - 165538
Alignment:
Q  17 gaatattggcttgattcctttctcattgtta---tttctgtatatacaaaggttagaaggctatgcatgaaaattacaataaataattaca-at-tagta 111  Q
    |||||||| |||||| |||||||||||||||   |||||||||||| | ||| || |||||||| ||  | ||||||| |||||||||||| || || |     
T  165670 gaatattgacttgatgcctttctcattgttattctttctgtatataaagaggatacaaggctataca--ataattacactaaataattacatatatattg 165573  T
Q  112 agaataaatcaatttttgatttatgtccttatttc 146  Q
      || |||||||||| |||||||||||||||||||    
T  165572 gaaacaaatcaatttctgatttatgtccttatttc 165538  T

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