View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18157_low_21 (Length: 481)

Name: NF18157_low_21
Description: NF18157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18157_low_21
NF18157_low_21
[»] chr7 (2 HSPs)
chr7 (1-199)||(44961877-44962076)
chr7 (389-456)||(44961809-44961876)
[»] chr2 (1 HSPs)
chr2 (87-236)||(43779407-43779556)
[»] chr8 (2 HSPs)
chr8 (87-196)||(42351734-42351843)
chr8 (90-215)||(25843023-25843148)
[»] chr1 (3 HSPs)
chr1 (87-190)||(8382284-8382387)
chr1 (90-201)||(7608544-7608654)
chr1 (139-187)||(31834875-31834926)
[»] chr5 (3 HSPs)
chr5 (115-196)||(19030579-19030660)
chr5 (111-201)||(35868429-35868519)
chr5 (155-236)||(29374543-29374625)
[»] chr4 (1 HSPs)
chr4 (111-236)||(34934118-34934243)


Alignment Details
Target: chr7 (Bit Score: 180; Significance: 5e-97; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 44962076 - 44961877
Alignment:
Q  1 ctatgaacacaataaattggctctaaattaattaacacaataaaaagaggattataaggagatagcttccaaattcaaaaactagactatgtttggctgt 100  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  44962076 ctatgaacacaataaattggctctaaaataattaacacaataaaaagaggattataaggagatagcttccaaattcaaaaactagattatgtttggctgt 44961977  T
Q  101 gcggtggcattttccacatcaagccaaaattatagtaggaactcacgtttgcaatgaagctacatatagtagt-ttttcaaatcacggcaatttttgtct 199  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  44961976 gcggtggcattttccacatcaagcgaaaattatagtaggaactcacgtttgcaatgaagctacatatagtagttttttcaaatcacggcaatttttgtct 44961877  T

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Target: chr7; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 389 - 456
Target Start/End: Complemental strand, 44961876 - 44961809
Alignment:
Q  389 ctagtacggcagtgttggtgcaagctttacatttaagtttccttaattaagattgtaacttggtagag 456  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  44961876 ctagtacggcagtgttggtgcaagctttacatttaagtttccttaattaagatcgtaacttggtagag 44961809  T

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Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 87 - 236
Target Start/End: Complemental strand, 43779556 - 43779407
Alignment:
Q  87 ctatgtttggctgtgcggtggcattttccacatcaagccaaaattatagtaggaactcacgtttgcaatgaagctacatatagtag-tttttcaaatcac 185  Q
    |||||||||||||||| ||| ||||| ||||||||| ||||||| |  | ||||||||||||||||| ||||||||||||||||||  ||| ||||||||    
T  43779556 ctatgtttggctgtgcagtgccattt-ccacatcaaaccaaaatcacggcaggaactcacgtttgcagtgaagctacatatagtagcctttccaaatcac 43779458  T
Q  186 ggcaatttttgtcttgagatgtaagaaaacttattccatcgcacattcaaa 236  Q
    | ||||||||| |||| || | |||||||||| ||||||||||||| ||||    
T  43779457 gacaatttttgccttgggacgcaagaaaacttgttccatcgcacatccaaa 43779407  T

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Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 87 - 196
Target Start/End: Complemental strand, 42351843 - 42351734
Alignment:
Q  87 ctatgtttggctgtgcggtggcattttccacatcaagccaaaattatagtaggaactcacgtttgcaatgaagctacatatagtag-tttttcaaatcac 185  Q
    |||||||||| ||||||||  ||||||| ||||||||||||||| |  | ||||| ||||||||||| |||||||||||||||| | |||||||||||||    
T  42351843 ctatgtttggttgtgcggtaccattttc-acatcaagccaaaatcacggcaggaattcacgtttgcagtgaagctacatatagttgctttttcaaatcac 42351745  T
Q  186 ggcaatttttg 196  Q
    |||||||||||    
T  42351744 ggcaatttttg 42351734  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 90 - 215
Target Start/End: Original strand, 25843023 - 25843148
Alignment:
Q  90 tgtttggctgtgcggtggcattttccacatcaagccaaaattatagtaggaactcacgtttgcaatgaagctacatatagtagtttttc-aaatcacggc 188  Q
    |||||||||||| ||||  |||| ||||||||| ||||||| | || |||   ||||||||| | |||||||||| || ||||  |||| ||||||||||    
T  25843023 tgtttggctgtgtggtgtaattt-ccacatcaaaccaaaatcacagcaggtggtcacgtttgtagtgaagctacacatggtagcgtttccaaatcacggc 25843121  T
Q  189 aatttttgtcttgagatgtaagaaaac 215  Q
    |||||||| |||| |||| ||||||||    
T  25843122 aatttttgccttgggatgcaagaaaac 25843148  T

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Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 87 - 190
Target Start/End: Complemental strand, 8382387 - 8382284
Alignment:
Q  87 ctatgtttggctgtgcggtggcattttccacatcaagccaaaattatagtaggaactcacgtttgcaatgaagctacatatagtag-tttttcaaatcac 185  Q
    |||||||||||||||||||| ||||| ||||||||||||||||| |  | ||||||||||||||||| ||||||||| |||||||| |||| | ||||||    
T  8382387 ctatgtttggctgtgcggtgccattt-ccacatcaagccaaaatcacggcaggaactcacgtttgcagtgaagctacgtatagtagcttttccgaatcac 8382289  T
Q  186 ggcaa 190  Q
    |||||    
T  8382288 ggcaa 8382284  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 90 - 201
Target Start/End: Complemental strand, 7608654 - 7608544
Alignment:
Q  90 tgtttggctgtgcggtggcattttccacatcaagccaaaattatagtaggaactcacgtttgcaatgaagctacatatagtag-tttttcaaatcacggc 188  Q
    ||||||| ||||||||  ||||||| |||||||| |||||| |  ||| |||| |||||||||  |||||||||||||||||| |||| ||||||||  |    
T  7608654 tgtttggttgtgcggtaccattttc-acatcaaggcaaaatcacggtaagaac-cacgtttgctgtgaagctacatatagtagcttttccaaatcacatc 7608557  T
Q  189 aatttttgtcttg 201  Q
    |||||||| ||||    
T  7608556 aatttttgccttg 7608544  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 139 - 187
Target Start/End: Complemental strand, 31834926 - 31834875
Alignment:
Q  139 gaactcacgtttgcaatgaagctaca--tatagtag-tttttcaaatcacgg 187  Q
    |||||||||||| |||||||||||||  |||||||| |||||||||||||||    
T  31834926 gaactcacgtttccaatgaagctacatatatagtagctttttcaaatcacgg 31834875  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 115 - 196
Target Start/End: Original strand, 19030579 - 19030660
Alignment:
Q  115 cacatcaagccaaaattatagtaggaactcacgtttgcaatgaagctacatatagtag-tttttcaaatcacggcaatttttg 196  Q
    ||||||||| |||||| |  | |||||| ||||||| || |||||||||||||||||| ||||||||||||||||||||||||    
T  19030579 cacatcaaggcaaaatcacggcaggaac-cacgtttacactgaagctacatatagtagctttttcaaatcacggcaatttttg 19030660  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 111 - 201
Target Start/End: Original strand, 35868429 - 35868519
Alignment:
Q  111 tttccacatcaagccaaaattatagtaggaactcacgtttgcaatgaagctacatatagtagtttttc-aaatcacggcaatttttgtcttg 201  Q
    ||||||||||||| |||||| |  | |||||| ||||||| || |||||||||||||| ||| ||||| |||||||||||||||||| ||||    
T  35868429 tttccacatcaaggcaaaatcacggcaggaac-cacgtttacactgaagctacatataatagcttttccaaatcacggcaatttttgccttg 35868519  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 236
Target Start/End: Complemental strand, 29374625 - 29374543
Alignment:
Q  155 tgaagctacatatagtagtttttc-aaatcacggcaatttttgtcttgagatgtaagaaaacttattccatcgcacattcaaa 236  Q
    ||||| |||||||||||| ||||| |||||||||||||||||| |||| ||||  ||||| ||  ||||| ||||||| ||||    
T  29374625 tgaagttacatatagtagcttttccaaatcacggcaatttttgccttgggatgcgagaaagctgcttccaccgcacatccaaa 29374543  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 111 - 236
Target Start/End: Original strand, 34934118 - 34934243
Alignment:
Q  111 tttccacatcaagccaaaattatagtaggaactcacgtttgcaatgaagctacatatagtag-tttttcaaatcacggcaatttttgtcttgagatgtaa 209  Q
    |||||||||||||| ||||| |   ||||||| |||||||||| |||| ||||||||||||| |||| ||||| || ||||||||||  ||| || |  |    
T  34934118 tttccacatcaagcaaaaatcacgctaggaac-cacgtttgcagtgaaactacatatagtagcttttccaaataactgcaatttttgctttgggacgcga 34934216  T
Q  210 gaaaacttattccatcgcacattcaaa 236  Q
    |||||||||||||| ||||||| ||||    
T  34934217 gaaaacttattccaccgcacatccaaa 34934243  T

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