View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18157_low_27 (Length: 410)
Name: NF18157_low_27
Description: NF18157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18157_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 362; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 18 - 400
Target Start/End: Complemental strand, 1025240 - 1024858
Alignment:
| Q |
18 |
aaaacggtgtagtgtactcctttcagccaatgctggcttaggcttctctgaagaagaaacctccaaaagacctggaaccacaaaagaactatcagtaaaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1025240 |
aaaacggtgtagtgtactcctttcagccaatgctggcttaggcttctctgaagaagaaacctccaaaagacctggaaccacaaaagaactatcagtaaaa |
1025141 |
T |
|
| Q |
118 |
ctatagactaaaaacaacctcaaataatgcaaagaaaaatcttgacttgtgatttcatagttcaataatttatagatttctaaaaagaaaatcataagct |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1025140 |
ctatagactaaaaacaacctcaaataatgcaaagaaaaatcttgacttgtgatttcatagttcaataatttatagatttctaaaaagaaaatcataagct |
1025041 |
T |
|
| Q |
218 |
attttctgatttttcaccaaaatgaaaatcactgttnnnnnnnttcatcaaaataagctactcaaagcaagctttgtattttaaacagattatcattttt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1025040 |
attttctgatttttcaccaaaatgaaaatcactgttaaaaaaattcatcaaaataagctactcaaagcaagctttgtattttaaacagattatcattttt |
1024941 |
T |
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| Q |
318 |
taagaatagaattaacaaatagttgaaaaactccaaaagtgatttttaatcatgatcagttacaaactgccgctaagcctatg |
400 |
Q |
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| T |
1024940 |
taagaatagaattaacaaatagttgaaaaactccaaaagtgatttttaatcatgatcagttacaaactgccgctaagcctatg |
1024858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 40827069 - 40826996
Alignment:
| Q |
18 |
aaaacggtgtagtgtactcctttcagccaatgctggcttaggcttctctgaagaagaaacctccaaaagacctg |
91 |
Q |
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| T |
40827069 |
aaaacggcgtaatgtacccttttcagccaatgttggcttaggcttttctgaagaagaaacctccaaaagacctg |
40826996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 18 - 400
Target Start/End: Complemental strand, 46548682 - 46548300
Alignment:
| Q |
18 |
aaaacggtgtagtgtactcctttcagccaatgctggcttaggcttctctgaagaagaaacctccaaaagacctggaaccacaaaagaactatcagtaaaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46548682 |
aaaacggtgtagtgtactcctttcagccaatgctggcttaggcttctctgaagaagaaacctccaaaagacctggaaccacaaaagaactatcagtaaaa |
46548583 |
T |
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| Q |
118 |
ctatagactaaaaacaacctcaaataatgcaaagaaaaatcttgacttgtgatttcatagttcaataatttatagatttctaaaaagaaaatcataagct |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
46548582 |
ctatagactaaaaacaacctcaaataatgcaaagaaaattcttgacttgtgatttcattgttcaataatttatagatttctaaaaagaaaatcataagct |
46548483 |
T |
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| Q |
218 |
attttctgatttttcaccaaaatgaaaatcactgttnnnnnnnttcatcaaaataagctactcaaagcaagctttgtattttaaacagattatcattttt |
317 |
Q |
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|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46548482 |
attttctgatttttcaccaaaatgaaaatcactgttaaaaaaattcatcaaaataagctactcaaagcaagctttgtattttaaacagattatcattttt |
46548383 |
T |
|
| Q |
318 |
taagaatagaattaacaaatagttgaaaaactccaaaagtgatttttaatcatgatcagttacaaactgccgctaagcctatg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46548382 |
taagaatagaattaacaaatagttgaaaaactccaaaattgatttttaatcatgatcagttacaaactgccgctaagcctatg |
46548300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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