View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18157_low_28 (Length: 373)
Name: NF18157_low_28
Description: NF18157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18157_low_28 |
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Alignment Details
Target: chr6 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 34819694 - 34819337
Alignment:
| Q |
1 |
agtgtttcttgtttgcgctctgtggtgttgcttgaagtgatggaggaaaagtttcaggctgtaaaatcgaatgcagataggctaaagcaggagaacgaag |
100 |
Q |
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| T |
34819694 |
agtgtttcttgtttgcgctctgtggtgttgcttgaagtgatggaggaaaagtttcaggctgtaaaatcgaatgcagataggctaaagcaggagaacgaag |
34819595 |
T |
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| Q |
101 |
acttgaagttaagggttaaaaccttggaggaccagttgaaggaatctcgcaactccttaaagacgacaaaggatgagaaaaagaaagtcgaggaagataa |
200 |
Q |
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| T |
34819594 |
acttgaagttgagggttaaaaccttggaggaccagttgaaggaatctcgcaactccttaaagacgacaaaggatgagaaaaagaaagtcgaggaagataa |
34819495 |
T |
|
| Q |
201 |
gcgagatgttgaagccaagtgcttggagcttaataacaatgatggtgccataaagggggaggttaagaaggacgttgagaagattatcgagttgcaagag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||| |
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| T |
34819494 |
gcgagatgttgaagccaagtgcttggagcttaataacaattatggtgccataaagggggaggttaagaaggatgttcagaagattatcgagtttcaagag |
34819395 |
T |
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| Q |
301 |
ggtgttgaaaatgcaaagaaagggtggttgggaatatggaaaagggggaggttgagaa |
358 |
Q |
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| T |
34819394 |
ggtgttgaaaatgcaaagaaagggtggttgcgaatatggaaaagggggaagttgagaa |
34819337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 22080655 - 22080589
Alignment:
| Q |
3 |
tgtttcttgtttgcgctctgtggtgttgcttgaagtgatggaggaaaagtttcaggctgtaaaatcg |
69 |
Q |
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| T |
22080655 |
tgtttcttgtctgcgttctatagtgttgcttgaagtgatggaggaagatttttaggctgtaaaatcg |
22080589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 240
Target Start/End: Complemental strand, 22080561 - 22080435
Alignment:
| Q |
114 |
ggttaaaaccttggaggaccagttgaaggaatctcgcaactccttaaagacgacaaaggatgagaaaaagaaagtcgaggaagataagcgagatgttgaa |
213 |
Q |
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||||||| |||| ||||| |||||||||| ||| |||| ||||||||||| | | | ||||||| |||||||| |||| ||||||| |||| |||| |
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| T |
22080561 |
ggttaaatccttagaggattagttgaaggattctggcaattccttaaagacagcgaggtatgagaagaagaaagtttaggagaataagcgggatgctgaa |
22080462 |
T |
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| Q |
214 |
gccaagtgcttggagcttaataacaat |
240 |
Q |
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|| ||| || ||||||||||||||| |
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| T |
22080461 |
gctaagctgttagagcttaataacaat |
22080435 |
T |
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