View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18157_low_29 (Length: 358)
Name: NF18157_low_29
Description: NF18157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18157_low_29 |
 | |
|
| [»] scaffold0400 (2 HSPs) |
| | |
|
| [»] scaffold0365 (2 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 3 - 340
Target Start/End: Original strand, 15010302 - 15010639
Alignment:
| Q |
3 |
cgatttggaaggactcgatttatccgataataattttgttggtcatttacctcacaatatatgtgtcggtgggaagttnnnnnnnttcattactccactt |
102 |
Q |
| |
|
||||||||||| |||| ||||||| ||||||| ||||||||||||||||||||||||||| ||||| ||||||||||| |||| | || ||||| |
|
|
| T |
15010302 |
cgatttggaagtactccatttatctgataatatttttgttggtcatttacctcacaatatttgtgttggtgggaagttaaaaacattcactgctgcactt |
15010401 |
T |
|
| Q |
103 |
aaccagttcacaggcctagttccagagagtttgaagaattgctcaagccttaagagactgaggcttgatcaaaaccaactgacgggaaatataacagaga |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
15010402 |
aaccagttcacaggcctagttccagagagtttgaagaattgctcaagccttacgagactgaggcttgatcaaaaccaacttactggaaatataacagaga |
15010501 |
T |
|
| Q |
203 |
gttttggtgtgtatccaaacttgtactacatggacttaagtgataataatttttatggtcatctttctccaaattggggaaagtgcaaaaatctcacagg |
302 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| | |
|
|
| T |
15010502 |
gttttggtgtgtatccaaacttggactacatggaattgagtgataataatttttatggtcatctttctccaaattggggaaagtgcaagattctcacaag |
15010601 |
T |
|
| Q |
303 |
cctaaaaatctccaataataatttaataggaagcatac |
340 |
Q |
| |
|
|||||||||||| ||||||||||| |||||| |||| |
|
|
| T |
15010602 |
cctaaaaatctctggtaataatttaacaggaagaatac |
15010639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 4 - 328
Target Start/End: Original strand, 15036323 - 15036647
Alignment:
| Q |
4 |
gatttggaaggactcgatttatccgataataattttgttggtcatttacctcacaatatatgtgtcggtgggaagttnnnnnnnttcattactccactta |
103 |
Q |
| |
|
|||||||||| |||||| |||| |||||||| ||| |||||||||||||||||||||| ||||||||||||||||| |||| | || |||||| |
|
|
| T |
15036323 |
gatttggaagtactcgaattatatgataataaatttattggtcatttacctcacaatatttgtgtcggtgggaagttaaaaacattcactgctgcactta |
15036422 |
T |
|
| Q |
104 |
accagttcacaggcctagttccagagagtttgaagaattgctcaagccttaagagactgaggcttgatcaaaaccaactgacgggaaatataacagagag |
203 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||| | |||||||||||||| ||||||||||||||||| |
|
|
| T |
15036423 |
accagttcagaggcctagttccagagagtttgaagaattgctcaagccttgagagattgaggcttaaccaaaaccaactgactggaaatataacagagag |
15036522 |
T |
|
| Q |
204 |
ttttggtgtgtatccaaacttgtactacatggacttaagtgataataatttttatggtcatctttctccaaattggggaaagtgcaaaaatctcacaggc |
303 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
|
|
| T |
15036523 |
ttttggtgtgtatccaaacttggactacatggacttgagtgataataatttttatggtcatctttctccaaattggggaaagtgcaagaatctcacaagc |
15036622 |
T |
|
| Q |
304 |
ctaaaaatctccaataataatttaa |
328 |
Q |
| |
|
|||||||||||| ||||||||||| |
|
|
| T |
15036623 |
ctaaaaatctccggtaataatttaa |
15036647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 15016415 - 15016754
Alignment:
| Q |
1 |
accgatttggaaggactcgatttatccgataataattttgttggtcatttacctcacaatatatgtgtcggtgggaagttnnnnnnnttcattactccac |
100 |
Q |
| |
|
||||||||| ||| ||||||||| | ||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||| | || | | |
|
|
| T |
15016415 |
accgatttgaaagcactcgatttgtatgataataattttgttggtcatttacctcataatatttgtgtcggtgggaagttggaaaaattctctgctgctc |
15016514 |
T |
|
| Q |
101 |
ttaaccagttcacaggcctagttccagagagtttgaagaattgctcaagccttaagagactgaggcttgatcaaaaccaactgacgggaaatataacaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| | |
|
|
| T |
15016515 |
ttaaccagttcacaggcctagttccagagagtttgaagaattgctcaagccttaagagactgaggcttgaacaaaaccaactgactggaaatataacaaa |
15016614 |
T |
|
| Q |
201 |
gagttttggtgtgtatccaaacttgtactacatggacttaagtgataataatttttatggtcatctttctccaaattggggaaagtgcaaaaatctcaca |
300 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| || |||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
15016615 |
tagttttggtgtgtatccaaacttggactacatggaattgagtgataataatttgtatggtcaaatttctccaaattggggaaagtgcaagaatctcaca |
15016714 |
T |
|
| Q |
301 |
ggcctaaaaatctccaataataatttaataggaagcatac |
340 |
Q |
| |
|
|||| ||||||||||| |||||||| | ||||||||||| |
|
|
| T |
15016715 |
agccttaaaatctccaacaataatttgacaggaagcatac |
15016754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 4 - 340
Target Start/End: Original strand, 15001410 - 15001746
Alignment:
| Q |
4 |
gatttggaaggactcgatttatccgataataattttgttggtcatttacctcacaatatatgtgtcggtgggaagttnnnnnnnttcattactccactta |
103 |
Q |
| |
|
|||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||| | | |||||| |
|
|
| T |
15001410 |
gatttggaagtactccatttatctgataataattttgttggtcatttacctcacaatatttgtaacggtgggaagttaaaaatgttcactgttgcactta |
15001509 |
T |
|
| Q |
104 |
accagttcacaggcctagttccagagagtttgaagaattgctcaagccttaagagactgaggcttgatcaaaaccaactgacgggaaatataacagagag |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||| | |||||||||||||| |||||||||||||| || |
|
|
| T |
15001510 |
accagttcacaggcctagttccagagagtttgaagaattgctcaagccttacgagagtgagacttcaacaaaaccaactgactggaaatataacagacag |
15001609 |
T |
|
| Q |
204 |
ttttggtgtgtatccaaacttgtactacatggacttaagtgataataatttttatggtcatctttctccaaattggggaaagtgcaaaaatctcacaggc |
303 |
Q |
| |
|
||||||||||||||||| ||| | |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
|
|
| T |
15001610 |
ctttggtgtgtatccaaatttggaatacatggatttgagtgataataatttttatggtcatctttctccaaattggggaaagtgcaagaatctcacaagc |
15001709 |
T |
|
| Q |
304 |
ctaaaaatctccaataataatttaataggaagcatac |
340 |
Q |
| |
|
|||||||||||||| |||||||| | ||||||||||| |
|
|
| T |
15001710 |
ctaaaaatctccaacaataatttgacaggaagcatac |
15001746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 15024417 - 15024756
Alignment:
| Q |
1 |
accgatttggaaggactcgatttatccgataataattttgttggtcatttacctcacaatatatgtgtcggtgggaagttnnnnnnnttcattactccac |
100 |
Q |
| |
|
||||||||||||| |||| ||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||| | |||| | || || |
|
|
| T |
15024417 |
accgatttggaagcactccatttagatgttaataattttgttggtcatttacctcacaatatttgtgtcggtgggaagataaaaaaattcactgctggac |
15024516 |
T |
|
| Q |
101 |
ttaaccagttcacaggcctagttccagagagtttgaagaattgctcaagccttaagagactgaggcttgatcaaaaccaactgacgggaaatataacaga |
200 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||| |||||||||||| | |
|
|
| T |
15024517 |
ttaaccagttcactggcttagttccagagagtttgaagaattgcttaagccttaaaagagtgaggcttgatcaaaaccaactgactggaaatataacaaa |
15024616 |
T |
|
| Q |
201 |
gagttttggtgtgtatccaaacttgtactacatggacttaagtgataataatttttatggtcatctttctccaaattggggaaagtgcaaaaatctcaca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
15024617 |
tagttttggtgtgtatccaaacttgtactacatggacttgaatgataataatttttatggtcatctttctccaaattggggaaagtgcaagaatctcaca |
15024716 |
T |
|
| Q |
301 |
ggcctaaaaatctccaataataatttaataggaagcatac |
340 |
Q |
| |
|
|||| |||||||| ||||||||||| |||||| |||| |
|
|
| T |
15024717 |
agccttaaaatctctggtaataatttaacaggaagaatac |
15024756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 15031758 - 15032097
Alignment:
| Q |
1 |
accgatttggaaggactcgatttatccgataataattttgttggtcatttacctcacaatatatgtgtcggtgggaagttnnnnnnnttcattactccac |
100 |
Q |
| |
|
||||||||||||| |||| ||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||| | |||| | || || |
|
|
| T |
15031758 |
accgatttggaagcactccatttagatgttaataattttgttggtcatttacctcacaatatttgtgtcggtgggaagataaaaaaattcactgctggac |
15031857 |
T |
|
| Q |
101 |
ttaaccagttcacaggcctagttccagagagtttgaagaattgctcaagccttaagagactgaggcttgatcaaaaccaactgacgggaaatataacaga |
200 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||| |||||||||||| | |
|
|
| T |
15031858 |
ttaaccagttcactggcttagttccagagagtttgaagaattgcttaagccttaaaagagtgaggcttgatcaaaaccaactgactggaaatataacaaa |
15031957 |
T |
|
| Q |
201 |
gagttttggtgtgtatccaaacttgtactacatggacttaagtgataataatttttatggtcatctttctccaaattggggaaagtgcaaaaatctcaca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
15031958 |
tagttttggtgtgtatccaaacttgtactacatggacttgaatgataataatttttatggtcatctttctccaaattggggaaagtgcaagaatctcaca |
15032057 |
T |
|
| Q |
301 |
ggcctaaaaatctccaataataatttaataggaagcatac |
340 |
Q |
| |
|
|||| |||||||| ||||||||||| |||||| |||| |
|
|
| T |
15032058 |
agccttaaaatctctggtaataatttaacaggaagaatac |
15032097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 122 - 340
Target Start/End: Complemental strand, 14523315 - 14523097
Alignment:
| Q |
122 |
ttccagagagtttgaagaattgctcaagccttaagagactgaggcttgatcaaaaccaactgacgggaaatataacagagagttttggtgtgtatccaaa |
221 |
Q |
| |
|
||||||||||||||||||| || || ||||||| ||| |||| ||| | |||||| || |||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
14523315 |
ttccagagagtttgaagaactgttctagccttataagattgagacttaaccaaaacaaaatgacaggaaatataacagatagttttggtgtgtatccaaa |
14523216 |
T |
|
| Q |
222 |
cttgtactacatggacttaagtgataataatttttatggtcatctttctccaaattggggaaagtgcaaaaatctcacaggcctaaaaatctccaataat |
321 |
Q |
| |
|
||| ||||||| || |||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||| ||| |||| ||||||||||||||| |
|
|
| T |
14523215 |
tttggactacatagaattaagtgataataatttttatggttatctttctccaaattgggggaagtgcaagaatctgacaagccttaaaatctccaataat |
14523116 |
T |
|
| Q |
322 |
aatttaataggaagcatac |
340 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
14523115 |
aatttaataggaagcatac |
14523097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 106 - 328
Target Start/End: Original strand, 15040161 - 15040383
Alignment:
| Q |
106 |
cagttcacaggcctagttccagagagtttgaagaattgctcaagccttaagagactgaggcttgatcaaaaccaactgacgggaaatataacagagagtt |
205 |
Q |
| |
|
||||||||||| | | ||||| |||||||||||||||| ||||| || |||||| |||| ||||| ||||||||||| | |||||||||||||| || | |
|
|
| T |
15040161 |
cagttcacaggtccaattccaaagagtttgaagaattgttcaagtctaaagagagtgagacttgaacaaaaccaacttgctggaaatataacagatagct |
15040260 |
T |
|
| Q |
206 |
ttggtgtgtatccaaacttgtactacatggacttaagtgataataatttttatggtcatctttctccaaattggggaaagtgcaaaaatctcacaggcct |
305 |
Q |
| |
|
||||||||| ||||||||||||||||||||| || |||| |||||| | || ||| ||| |||| || ||||||||||| |||| ||||||| | |||| |
|
|
| T |
15040261 |
ttggtgtgtgtccaaacttgtactacatggaattgagtggtaataaatattttggccatatttcacctaattggggaaaacgcaagaatctcataagcct |
15040360 |
T |
|
| Q |
306 |
aaaaatctccaataataatttaa |
328 |
Q |
| |
|
||||||||||| |||||||||| |
|
|
| T |
15040361 |
taaaatctccaacaataatttaa |
15040383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 102 - 334
Target Start/End: Original strand, 14503383 - 14503615
Alignment:
| Q |
102 |
taaccagttcacaggcctagttccagagagtttgaagaattgctcaagccttaagagactgaggcttgatcaaaaccaactgacgggaaatataacagag |
201 |
Q |
| |
|
|||||| |||||||| | | ||||| ||||||| ||||||||||| ||||||| ||| | |||||| | |||| ||| | || |||||||||||||| |
|
|
| T |
14503383 |
taaccaattcacagggccaattccaaagagtttaaagaattgctccagccttattagagttaggcttcaaaaaaatcaattaactggaaatataacagat |
14503482 |
T |
|
| Q |
202 |
agttttggtgtgtatccaaacttgtactacatggacttaagtgataataatttttatggtcatctttctccaaattggggaaagtgcaaaaatctcacag |
301 |
Q |
| |
|
|||||||||| |||||| | ||| |||||||||| || ||||| |||||||| ||||| ||||| || |||||||||||||||||||| | ||||||| |
|
|
| T |
14503483 |
ggttttggtgtttatccacatttggactacatggaattgagtgaaaataatttgtatggccatctatcaccaaattggggaaagtgcaagagtctcacaa |
14503582 |
T |
|
| Q |
302 |
gcctaaaaatctccaataataatttaataggaa |
334 |
Q |
| |
|
|||| |||||||||||||| ||||||| ||||| |
|
|
| T |
14503583 |
gccttaaaatctccaataacaatttaacaggaa |
14503615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 102 - 340
Target Start/End: Original strand, 14467204 - 14467442
Alignment:
| Q |
102 |
taaccagttcacaggcctagttccagagagtttgaagaattgctcaagccttaagagactgaggcttgatcaaaaccaactgacgggaaatataacagag |
201 |
Q |
| |
|
|||||| |||||||||| | ||||| ||||||||||||| ||||| |||||| | ||| | |||||| | ||||| ||||| || | |||||||| || |
|
|
| T |
14467204 |
taaccaattcacaggcccaattccaaagagtttgaagaactgctctagcctttatagagtaaggcttcaacaaaatcaactaactgacaatataactgat |
14467303 |
T |
|
| Q |
202 |
agttttggtgtgtatccaaacttgtactacatggacttaagtgataataatttttatggtcatctttctccaaattggggaaagtgcaaaaatctcacag |
301 |
Q |
| |
|
||||| ||| ||||||| ||| |||||||||| || |||||||||||||| ||||| ||||| || || ||||||||||| |||| ||||||||| |
|
|
| T |
14467304 |
gcctttggcgtgcatccaaaattggactacatggaattgagtgataataatttgtatggccatctatcaccgaattggggaaaatgcatgaatctcacat |
14467403 |
T |
|
| Q |
302 |
gcctaaaaatctccaataataatttaataggaagcatac |
340 |
Q |
| |
|
|||| ||||||| |||||| ||||||| ||||||||||| |
|
|
| T |
14467404 |
gccttaaaatcttcaataacaatttaacaggaagcatac |
14467442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 102 - 340
Target Start/End: Complemental strand, 14533456 - 14533218
Alignment:
| Q |
102 |
taaccagttcacaggcctagttccagagagtttgaagaattgctcaagccttaagagactgaggcttgatcaaaaccaactgacgggaaatataacagag |
201 |
Q |
| |
|
|||||| |||||||||| | ||||| ||||||||||||| ||||| || |||| ||| | || ||| | ||||| ||| | || | |||||||| || |
|
|
| T |
14533456 |
taaccaattcacaggcccaattccaaagagtttgaagaagtgctccagtcttatcagagtaagacttcaacaaaatcaaataactgacaatataactgat |
14533357 |
T |
|
| Q |
202 |
agttttggtgtgtatccaaacttgtactacatggacttaagtgataataatttttatggtcatctttctccaaattggggaaagtgcaaaaatctcacag |
301 |
Q |
| |
|
||||| ||||||||||| ||| |||||||||| || |||||||||||||||||||| ||| | || ||||||||||| |||||||| || |||||| |
|
|
| T |
14533356 |
gcctttggcgtgtatccaaatttggactacatggaattgagtgataataatttttatggccatatatcaccaaattggggtaagtgcaagaaactcacaa |
14533257 |
T |
|
| Q |
302 |
gcctaaaaatctccaataataatttaataggaagcatac |
340 |
Q |
| |
|
| || |||||||||| |||||||||| |||||||||| |
|
|
| T |
14533256 |
gtcttcaaatctccaacaataatttaactggaagcatac |
14533218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: scaffold0400
Description:
Target: scaffold0400; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 102 - 340
Target Start/End: Original strand, 5892 - 6130
Alignment:
| Q |
102 |
taaccagttcacaggcctagttccagagagtttgaagaattgctcaagccttaagagactgaggcttgatcaaaaccaactgacgggaaatataacagag |
201 |
Q |
| |
|
||||||||||| || ||||||||| ||||||| || ||||||||||||||||||||| |||| ||| | |||||||||||||| | |||||||||||| |
|
|
| T |
5892 |
taaccagttcattggtctagttccaaagagtttaaaaaattgctcaagccttaagagagtgagacttcaacaaaaccaactgactgcaaatataacagat |
5991 |
T |
|
| Q |
202 |
agttttggtgtgtatccaaacttgtactacatggacttaagtgataataatttttatggtcatctttctccaaattggggaaagtgcaaaaatctcacag |
301 |
Q |
| |
|
|| |||||||||||||| || ||| | || ||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
5992 |
agctttggtgtgtatccgaatttggaatatatggaattgagtgataataatttttatggtcatctctctccaaattggggaaagtgcaagaatctcacaa |
6091 |
T |
|
| Q |
302 |
gcctaaaaatctccaataataatttaataggaagcatac |
340 |
Q |
| |
|
|||| ||| | | |||||||||| || ||||||||||| |
|
|
| T |
6092 |
gccttaaagttttcaataataatatatcaggaagcatac |
6130 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 109 - 340
Target Start/End: Original strand, 12187 - 12418
Alignment:
| Q |
109 |
ttcacaggcctagttccagagagtttgaagaattgctcaagccttaagagactgaggcttgatcaaaaccaactgacgggaaatataacagagagttttg |
208 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||| ||||||| ||| | |||||| | |||| ||| | || |||||||||||||| |||||| |
|
|
| T |
12187 |
ttcacaggattagttccaatgagtttgaagaattgctccagccttattagagttaggcttcaaaaaaatcaattaactggaaatataacagatggttttg |
12286 |
T |
|
| Q |
209 |
gtgtgtatccaaacttgtactacatggacttaagtgataataatttttatggtcatctttctccaaattggggaaagtgcaaaaatctcacaggcctaaa |
308 |
Q |
| |
|
|||| |||||| | ||| ||||||||| ||||||||||||||||||||||| ||| | || ||||||||||| |||||||| || |||||| | || | |
|
|
| T |
12287 |
gtgtttatccacatttggtctacatggaattaagtgataataatttttatggccatatatcaccaaattggggtaagtgcaagaaactcacaagtcttca |
12386 |
T |
|
| Q |
309 |
aatctccaataataatttaataggaagcatac |
340 |
Q |
| |
|
||||||||| |||||||||| |||||||||| |
|
|
| T |
12387 |
aatctccaacaataatttaactggaagcatac |
12418 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: scaffold0365
Description:
Target: scaffold0365; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 102 - 340
Target Start/End: Original strand, 6536 - 6774
Alignment:
| Q |
102 |
taaccagttcacaggcctagttccagagagtttgaagaattgctcaagccttaagagactgaggcttgatcaaaaccaactgacgggaaatataacagag |
201 |
Q |
| |
|
||||||||||| || ||||||||| ||||||| || ||||||||||||||||||||| |||| ||| | |||||||||||||| | |||||||||||| |
|
|
| T |
6536 |
taaccagttcattggtctagttccaaagagtttaaaaaattgctcaagccttaagagagtgagacttcaacaaaaccaactgactgcaaatataacagat |
6635 |
T |
|
| Q |
202 |
agttttggtgtgtatccaaacttgtactacatggacttaagtgataataatttttatggtcatctttctccaaattggggaaagtgcaaaaatctcacag |
301 |
Q |
| |
|
|| |||||||||||||| || ||| | || ||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
6636 |
agctttggtgtgtatccgaatttggaatatatggaattgagtgataataatttttatggtcatctctctccaaattggggaaagtgcaagaatctcacaa |
6735 |
T |
|
| Q |
302 |
gcctaaaaatctccaataataatttaataggaagcatac |
340 |
Q |
| |
|
|||| ||| | | |||||||||| || ||||||||||| |
|
|
| T |
6736 |
gccttaaagttttcaataataatatatcaggaagcatac |
6774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 109 - 340
Target Start/End: Original strand, 12830 - 13061
Alignment:
| Q |
109 |
ttcacaggcctagttccagagagtttgaagaattgctcaagccttaagagactgaggcttgatcaaaaccaactgacgggaaatataacagagagttttg |
208 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||| ||||||| ||| | |||||| | |||| ||| | || |||||||||||||| |||||| |
|
|
| T |
12830 |
ttcacaggattagttccaatgagtttgaagaattgctccagccttattagagttaggcttcaaaaaaatcaattaactggaaatataacagatggttttg |
12929 |
T |
|
| Q |
209 |
gtgtgtatccaaacttgtactacatggacttaagtgataataatttttatggtcatctttctccaaattggggaaagtgcaaaaatctcacaggcctaaa |
308 |
Q |
| |
|
|||| |||||| | ||| ||||||||| ||||||||||||||||||||||| ||| | || ||||||||||| |||||||| || |||||| | || | |
|
|
| T |
12930 |
gtgtttatccacatttggtctacatggaattaagtgataataatttttatggccatatatcaccaaattggggtaagtgcaagaaactcacaagtcttca |
13029 |
T |
|
| Q |
309 |
aatctccaataataatttaataggaagcatac |
340 |
Q |
| |
|
||||||||| |||||||||| |||||||||| |
|
|
| T |
13030 |
aatctccaacaataatttaactggaagcatac |
13061 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 102 - 287
Target Start/End: Original strand, 16102283 - 16102468
Alignment:
| Q |
102 |
taaccagttcacaggcctagttccagagagtttgaagaattgctcaagccttaagagactgaggcttgatcaaaaccaactgacgggaaatataacagag |
201 |
Q |
| |
|
|||||| ||||| |||| |||||| ||||||||||||||||||| ||| ||| ||||| || ||||| ||||||||||| || |||||||||||| | |
|
|
| T |
16102283 |
taaccacttcaccggccgagttcctaagagtttgaagaattgctctagcattataagacttagacttgaccaaaaccaacttactggaaatataacacaa |
16102382 |
T |
|
| Q |
202 |
agttttggtgtgtatccaaacttgtactacatggacttaagtgataataatttttatggtcatctttctccaaattggggaaagtg |
287 |
Q |
| |
|
|||| |||| |||||||| ||| | ||||| ||||||||||| || |||||||| || || ||||| | |||||||||||||| |
|
|
| T |
16102383 |
gattttagtgtttatccaaatttgaattacatagacttaagtgaaaacaatttttacggacacctttcatcgaattggggaaagtg |
16102468 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 102 - 287
Target Start/End: Original strand, 16171961 - 16172146
Alignment:
| Q |
102 |
taaccagttcacaggcctagttccagagagtttgaagaattgctcaagccttaagagactgaggcttgatcaaaaccaactgacgggaaatataacagag |
201 |
Q |
| |
|
|||||| ||||| |||| |||||| ||||||||||||||||||| ||| ||| ||||| || ||||| ||||||||||| || |||||||||||| | |
|
|
| T |
16171961 |
taaccacttcaccggccgagttcctaagagtttgaagaattgctctagcattataagacttagacttgaccaaaaccaacttactggaaatataacacaa |
16172060 |
T |
|
| Q |
202 |
agttttggtgtgtatccaaacttgtactacatggacttaagtgataataatttttatggtcatctttctccaaattggggaaagtg |
287 |
Q |
| |
|
|||| |||| |||||||| ||| | ||||| ||||||||||| || |||||||| || || ||||| | |||||||||||||| |
|
|
| T |
16172061 |
gattttagtgtttatccaaatttgaattacatagacttaagtgaaaacaatttttacggacacctttcatcgaattggggaaagtg |
16172146 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 102 - 202
Target Start/End: Original strand, 14605299 - 14605399
Alignment:
| Q |
102 |
taaccagttcacaggcctagttccagagagtttgaagaattgctcaagccttaagagactgaggcttgatcaaaaccaactgacgggaaatataacagag |
201 |
Q |
| |
|
|||||| ||||||||| ||||||| ||||||||||||||||||| ||| ||| || | || ||||| ||||||||||| || ||||||||||||||| |
|
|
| T |
14605299 |
taaccacttcacaggctcagttccaaagagtttgaagaattgctctagcattattaggattagacttgaacaaaaccaacttactggaaatataacagag |
14605398 |
T |
|
| Q |
202 |
a |
202 |
Q |
| |
|
| |
|
|
| T |
14605399 |
a |
14605399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 129 - 260
Target Start/End: Original strand, 17847959 - 17848090
Alignment:
| Q |
129 |
gagtttgaagaattgctcaagccttaagagactgaggcttgatcaaaaccaactgacgggaaatataacagagagttttggtgtgtatccaaacttgtac |
228 |
Q |
| |
|
|||||||||||||||||||||| || ||| | |||||||| ||||||||||| | |||||||||||||| |||||||||||||| || ||| | |
|
|
| T |
17847959 |
gagtttgaagaattgctcaagcattgtaagaattaggcttgaacaaaaccaactttctggaaatataacagatttctttggtgtgtatccgaatttggat |
17848058 |
T |
|
| Q |
229 |
tacatggacttaagtgataataatttttatgg |
260 |
Q |
| |
|
|||||| | || ||| | |||||||||||||| |
|
|
| T |
17848059 |
tacatgcatttgagtcaaaataatttttatgg |
17848090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 102 - 286
Target Start/End: Original strand, 16024482 - 16024666
Alignment:
| Q |
102 |
taaccagttcacaggcctagttccagagagtttgaagaattgctcaagccttaagagactgaggcttgatcaaaaccaactgacgggaaatataacagag |
201 |
Q |
| |
|
|||||| ||||| |||| |||||| ||||||||||||||||||| ||| ||| ||||| | ||||| ||||||||||| || ||||||||||| || |
|
|
| T |
16024482 |
taaccacttcactggccgcgttccaaagagtttgaagaattgctctagcattataagacttcgacttgaacaaaaccaacttactggaaatataaccgaa |
16024581 |
T |
|
| Q |
202 |
agttttggtgtgtatccaaacttgtactacatggacttaagtgataataatttttatggtcatctttctccaaattggggaaagt |
286 |
Q |
| |
|
|||||||| |||||| | ||| |||||| | |||||| | || ||||||||||| || ||||| | ||||||| ||||| |
|
|
| T |
16024582 |
gactttggtgtatatccagatttggtttacatgcaattaagtcaaaacaatttttatggacacctttcatccaattgggaaaagt |
16024666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 269
Target Start/End: Complemental strand, 17826689 - 17826625
Alignment:
| Q |
205 |
tttggtgtgtatccaaacttgtactacatggacttaagtgataataatttttatggtcatctttc |
269 |
Q |
| |
|
||||||||| ||||||| |||||||||||| | || ||||| ||| |||||||||| || ||||| |
|
|
| T |
17826689 |
tttggtgtgcatccaaatttgtactacatgcagttgagtgaaaatcatttttatggccacctttc |
17826625 |
T |
|
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