View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18157_low_35 (Length: 308)
Name: NF18157_low_35
Description: NF18157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18157_low_35 |
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Alignment Details
Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 34819770 - 34820068
Alignment:
| Q |
1 |
cacgaagccagcacgatcgaagttcctgttccacaaggagccgccgatctcaacctcaagaacgcactcgaccttcttcttgttggcctcgccttcataa |
100 |
Q |
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| T |
34819770 |
cacgaagccagcacgatcgaagttcctgttccacaaggagccgccgatctcaacctcaagaacgcactcgacattcttcttgttggcctcgcctttatca |
34819869 |
T |
|
| Q |
101 |
ctcttccctttcttctttaaaggacatgcctcagcgagttgatggtcaatcttagcttgcaaaaccacctcatacataccaacatcatttttggtgatac |
200 |
Q |
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| T |
34819870 |
ctcttccctttcttctttaaaggacatgcctcaacgagttgatggtcaatcttagcttgcaaaaccaccgcatacgtaccatcatcatttttggtgatac |
34819969 |
T |
|
| Q |
201 |
tctcgtcaataaaacttccagcaaagatttctgattcagacttagatcttcttattgcttttgcactaaacacatttattctcgttcctttatattctt |
299 |
Q |
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| T |
34819970 |
tctcgtcaacaaaactcccagccaagatttctgattcagacttggatcttctaattgcttttgcactaaacacatttagtctcattcctttatgttctt |
34820068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 74 - 216
Target Start/End: Original strand, 34820119 - 34820261
Alignment:
| Q |
74 |
ttcttcttgttggcctcgccttcataactcttccctttcttctttaaaggacatgcctcagcgagttgatggtcaatcttagcttgcaaaaccacctcat |
173 |
Q |
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||||||||| | | |||||||| || ||||||||||||||||||||||||| | |||||||||||||||||||||| || ||||| |||| ||||| |
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| T |
34820119 |
ttcttcttggttgtctcgcctttatcactcttccctttcttctttaaaggagacgcctcagcgagttgatggtcaacctcagcttccaaagtcacctatg |
34820218 |
T |
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| Q |
174 |
acataccaacatcatttttggtgatactctcgtcaataaaact |
216 |
Q |
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| T |
34820219 |
acgtaccaacattattttttgtgatgctctcgtcaacaaaact |
34820261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 134 - 216
Target Start/End: Original strand, 34820530 - 34820612
Alignment:
| Q |
134 |
gcgagttgatggtcaatcttagcttgcaaaaccacctcatacataccaacatcatttttggtgatactctcgtcaataaaact |
216 |
Q |
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||||| |||||||||| || | ||| |||||||||||| ||||||| |||||| |||| |||||||| ||||||| |||||| |
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| T |
34820530 |
gcgagctgatggtcaagctcaacttccaaaaccacctccgacataccgacatcaattttagtgatactttcgtcaacaaaact |
34820612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 134 - 215
Target Start/End: Original strand, 34820296 - 34820377
Alignment:
| Q |
134 |
gcgagttgatggtcaatcttagcttgcaaaaccacctcatacataccaacatcatttttggtgatactctcgtcaataaaac |
215 |
Q |
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| T |
34820296 |
gcgagttgatggtcaaccacaacttccaaagccacctctgacgtaccaaaatcattttttgtgatactctcgtcaacaaaac |
34820377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 216
Target Start/End: Original strand, 34820653 - 34820729
Alignment:
| Q |
140 |
tgatggtcaatcttagcttgcaaaaccacctcatacataccaacatcatttttggtgatactctcgtcaataaaact |
216 |
Q |
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||||||| || || ||||| |||| ||||||| || |||||| ||||||||| |||||||||||||||| |||||| |
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| T |
34820653 |
tgatggttaacctcagcttccaaagccacctctgacgtaccaatatcattttttgtgatactctcgtcaacaaaact |
34820729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 177 - 216
Target Start/End: Original strand, 34820807 - 34820846
Alignment:
| Q |
177 |
taccaacatcatttttggtgatactctcgtcaataaaact |
216 |
Q |
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|||||||||||||||| |||||||||||||||| |||||| |
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| T |
34820807 |
taccaacatcattttttgtgatactctcgtcaacaaaact |
34820846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 216
Target Start/End: Original strand, 34820413 - 34820495
Alignment:
| Q |
134 |
gcgagttgatggtcaatcttagcttgcaaaaccacctcatacataccaacatcatttttggtgatactctcgtcaataaaact |
216 |
Q |
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||||| |||||||||| || | ||| |||||||||||| | |||||||||||||||| ||| ||||||||||| |||||| |
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| T |
34820413 |
gcgagctgatggtcaacctcaactttcaaaaccacctctgatgtaccaacatcattttttatgacactctcgtcaacaaaact |
34820495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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