View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18157_low_36 (Length: 302)
Name: NF18157_low_36
Description: NF18157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18157_low_36 |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 66 - 287
Target Start/End: Original strand, 33116396 - 33116617
Alignment:
| Q |
66 |
ctcataggagtattacacatgttgcctagcctcatcaaattgtcaaagcataattacaaactcttaattcgttctaaataaatttcgttgaataaaaaac |
165 |
Q |
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| T |
33116396 |
ctcataggagtattacacatgttgcctagcctcattaaattgtcaaagcataattacaaactcttaattcgttctaaataaatttcgttgaataaaaaac |
33116495 |
T |
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| Q |
166 |
ttaagaaaagttaaattaatagtggtattaaatttgattcaagcaaagactaagctcaatcaactccaacacattttttgcaagtatttggtggtcatgg |
265 |
Q |
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| T |
33116496 |
ttaagaaaagttaaattaatagtggtattaaatttgattcaagcaaagactaagctcaatcaactccaacacattttttgcaagtatttggtggtcatgg |
33116595 |
T |
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| Q |
266 |
cgcaaccataactcttattgct |
287 |
Q |
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||||||| |||||||||||||| |
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| T |
33116596 |
cgcaaccgtaactcttattgct |
33116617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 12 - 68
Target Start/End: Original strand, 33116313 - 33116369
Alignment:
| Q |
12 |
gcatggttctctgttccggttcagacaagagggaaacactgtattaataagtgtctc |
68 |
Q |
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| T |
33116313 |
gcatggttctctgttccggttcagacaagagggaaacactgtattaataagtgtctc |
33116369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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