View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18157_low_38 (Length: 292)
Name: NF18157_low_38
Description: NF18157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18157_low_38 |
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Alignment Details
Target: chr1 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 28 - 245
Target Start/End: Complemental strand, 44108249 - 44108028
Alignment:
| Q |
28 |
aaagaaattgaagcaaaagatgaatgtgtttgggggaaattagattttcaaatgacaatattatattaacaattgtataataaccgattgagattcgaga |
127 |
Q |
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| T |
44108249 |
aaagaaattaaagcata-gatgaatgtgtttgggggaaattagattttgaaatgacaatattatattaacaattgtataataaccaattgagattcgaga |
44108151 |
T |
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| Q |
128 |
acaacaacacaatcgaagcacaaaaattagaa-aaatattaagaacaaaaattgaatcatttgaaaactgcagaa----gaacaagtaacacgtggagaa |
222 |
Q |
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| T |
44108150 |
acaacaacacaatcgtagcacagaaattagaataaaaattaagaacaaaaattgaatcatttgaaaactgcagaagaacgaacaattaacacatggagaa |
44108051 |
T |
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| Q |
223 |
aaagaaaatggaatggaatcgtt |
245 |
Q |
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|||||||||||||||| |||||| |
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| T |
44108050 |
aaagaaaatggaatggtatcgtt |
44108028 |
T |
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