View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18157_low_40 (Length: 276)
Name: NF18157_low_40
Description: NF18157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18157_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 13 - 260
Target Start/End: Complemental strand, 28790268 - 28790019
Alignment:
| Q |
13 |
aatatcctaaatcctaaatacatagtccaaattatttccattaattnnnnnnnctccaatattaaatcattaatcaatatatata--acattggttgttt |
110 |
Q |
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| T |
28790268 |
aatatcctaaatcctaaatacatagtccaaattatttccattaattaaaaaaactccaatattaaatcattaatcaatatatatataacattggttgttt |
28790169 |
T |
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| Q |
111 |
tgagtgtgattcttggttttatatagcagcacaaaacacaagcttctattctatttcagcacgcttgctttatggttaagctttcttactgaagaatttt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28790168 |
tgagtgtgattcttggttttatatagcagcacaaaacacaagcttctattctatttcagcacgcttgctttatggttaagctttcttactgaagaatttt |
28790069 |
T |
|
| Q |
211 |
gcatagtttgaaatggaacctttcttcctcttctctcgctcattcattct |
260 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
28790068 |
gcatagtttgaaatggaacctttcttcctcttctctctctcattcattct |
28790019 |
T |
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