View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18157_low_46 (Length: 244)
Name: NF18157_low_46
Description: NF18157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18157_low_46 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 1605768 - 1605538
Alignment:
| Q |
1 |
taagggaagctattaagaataatgatagttagtagtgtaagtaattagttcaattatttggtaagtgtgaaatacaaaactagttagagtttattattag |
100 |
Q |
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| T |
1605768 |
taagggaagctattaagaataatgatagttagtagtgtaagtaattagttcaattatttggtaagtgtgaaatacaaaattagttagagtttattattag |
1605669 |
T |
|
| Q |
101 |
gaagttaccttttatcaaaatgattctcttcgtctattattctcattcaatcttttaaagctcttttcattcaatttctccaaatcctcaaaatcttaac |
200 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
1605668 |
gaagttaccttttatcaaaatgattctcttcgtgtattattctcattcaaccttttaaagctcttttcattcaatttctccaaatcctcaaaattttaac |
1605569 |
T |
|
| Q |
201 |
atggtgtgttggttgaaaatatacatgttga |
231 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
1605568 |
atggtgtgttggttgaaaatatacatgttga |
1605538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 1622881 - 1622832
Alignment:
| Q |
8 |
agctattaagaataatgatagttagtagtgtaagtaattagttcaattat |
57 |
Q |
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| T |
1622881 |
agctattaagaataatgatagttagcggtgtaagtaattagttcaattat |
1622832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 3 - 107
Target Start/End: Complemental strand, 18780581 - 18780477
Alignment:
| Q |
3 |
agggaagctattaagaataatgatagttagtagtgtaagtaattagttcaattatttggtaagtgtgaaatacaaaactagttagagtttattattagga |
102 |
Q |
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| T |
18780581 |
agggaagctattaagaaaaatgatagttagtagtgtaagtaattagttcaattattgggtaagtgtgaaatacaaaattagttagagtttattattagga |
18780482 |
T |
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| Q |
103 |
agtta |
107 |
Q |
| |
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||||| |
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| T |
18780481 |
agtta |
18780477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 107 - 231
Target Start/End: Complemental strand, 18780420 - 18780297
Alignment:
| Q |
107 |
accttttatcaaaatgattctcttcgtctattattctcattcaatcttttaaagctcttttcattcaatttctccaaatcctcaaaatcttaacatggtg |
206 |
Q |
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||||||||||||||||||||||| || |||||||||||||||| ||||||| |||||| | |||||||||||||||||||||||||||||||||| ||| |
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| T |
18780420 |
accttttatcaaaatgattctctacgagtattattctcattcaaccttttaatgctcttgttattcaatttctccaaatcctcaaaatcttaacat-gtg |
18780322 |
T |
|
| Q |
207 |
tgttggttgaaaatatacatgttga |
231 |
Q |
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| T |
18780321 |
tcttggttgaaaatatacatgttga |
18780297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 202
Target Start/End: Complemental strand, 18776024 - 18775984
Alignment:
| Q |
162 |
tcttttcattcaatttctccaaatcctcaaaatcttaacat |
202 |
Q |
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|||||||||| ||| |||||||||||||||||||||||||| |
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| T |
18776024 |
tcttttcatttaatatctccaaatcctcaaaatcttaacat |
18775984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 234
Target Start/End: Complemental strand, 23038210 - 23038182
Alignment:
| Q |
206 |
gtgttggttgaaaatatacatgttgatga |
234 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
23038210 |
gtgttggttgaaaatatacatgttgatga |
23038182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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