View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18157_low_5 (Length: 692)

Name: NF18157_low_5
Description: NF18157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18157_low_5
NF18157_low_5
[»] chr2 (8 HSPs)
chr2 (410-603)||(30972002-30972197)
chr2 (186-396)||(30972267-30972484)
chr2 (195-396)||(30979881-30980089)
chr2 (85-147)||(30972546-30972608)
chr2 (391-447)||(30979774-30979830)
chr2 (89-167)||(30980140-30980218)
chr2 (391-500)||(5370130-5370237)
chr2 (456-591)||(33855815-33855951)
[»] chr8 (4 HSPs)
chr8 (407-603)||(15258268-15258466)
chr8 (471-590)||(16072875-16072995)
chr8 (178-279)||(15257961-15258062)
chr8 (454-594)||(37378945-37379087)
[»] chr1 (11 HSPs)
chr1 (410-603)||(17596530-17596723)
chr1 (442-500)||(15877951-15878009)
chr1 (454-537)||(21502037-21502121)
chr1 (604-687)||(30746656-30746738)
chr1 (604-687)||(30768107-30768189)
chr1 (442-501)||(33078961-33079020)
chr1 (600-682)||(30747995-30748076)
chr1 (600-682)||(30769446-30769527)
chr1 (456-555)||(19882992-19883093)
chr1 (600-688)||(17596358-17596448)
chr1 (415-499)||(26780252-26780333)
[»] chr4 (8 HSPs)
chr4 (433-603)||(9273881-9274053)
chr4 (419-603)||(9253910-9254094)
chr4 (407-600)||(8912181-8912376)
chr4 (390-593)||(11489208-11489414)
chr4 (409-593)||(5066867-5067053)
chr4 (408-500)||(20570632-20570721)
chr4 (228-278)||(8912566-8912616)
chr4 (415-500)||(51461727-51461809)
[»] chr7 (7 HSPs)
chr7 (409-603)||(16253115-16253311)
chr7 (397-600)||(16301169-16301373)
chr7 (398-590)||(5056970-5057164)
chr7 (441-500)||(23627866-23627925)
chr7 (212-273)||(16253524-16253585)
chr7 (212-273)||(16300907-16300968)
chr7 (454-511)||(18398749-18398806)
[»] chr3 (12 HSPs)
chr3 (390-603)||(32202676-32202895)
chr3 (485-603)||(16220953-16221076)
chr3 (399-501)||(3255942-3256042)
chr3 (415-491)||(16218196-16218271)
chr3 (217-279)||(16217938-16218001)
chr3 (399-594)||(33797722-33797914)
chr3 (211-268)||(4781051-4781108)
chr3 (442-498)||(3283675-3283731)
chr3 (443-498)||(3257295-3257350)
chr3 (443-498)||(3270475-3270530)
chr3 (217-278)||(896498-896559)
chr3 (227-272)||(32202451-32202496)
[»] chr6 (6 HSPs)
chr6 (455-603)||(6633087-6633236)
chr6 (412-597)||(18626762-18626946)
chr6 (604-688)||(18626592-18626676)
chr6 (622-690)||(6633340-6633408)
chr6 (206-279)||(12602394-12602467)
chr6 (416-492)||(18714320-18714394)
[»] chr5 (2 HSPs)
chr5 (407-599)||(24884578-24884765)
chr5 (442-593)||(23361525-23361677)


Alignment Details
Target: chr2 (Bit Score: 140; Significance: 6e-73; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 410 - 603
Target Start/End: Complemental strand, 30972197 - 30972002
Alignment:
Q  410 tacaactttatatatcgcaagtaaattaataaatcataacccctccatgtctaaaccacttgaaggggtttagctcatggtgagctgaaccatggaaatg 509  Q
    ||||||||||||||||||||||||||||||||||||||||| | || |||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  30972197 tacaactttatatatcgcaagtaaattaataaatcataacctcaccgtgtctaaatcacttgaaggggtttagctcatggtgagctgaaccatgaaaatg 30972098  T
Q  510 gaaatg-agatggaaataaatgaaaacatag-aaactaaattaatagaatagatagagttgtcacaagattacaatccttgaaggaataaggtgag 603  Q
    |||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||| || ||||||||||||  ||||||||||||||||||    
T  30972097 gaaatgaagatggaaataaattaaaacatagaaaactaaattaatagaatagatagagttatcccaagattacaatatttgaaggaataaggtgag 30972002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 186 - 396
Target Start/End: Complemental strand, 30972484 - 30972267
Alignment:
Q  186 tataacgtggtatggctctagtgattcttagcgctatggacgtttattaacctcttaagccaactgagattcacagagttatagcttcctatagcttcaa 285  Q
    |||||| | |||| |||||||||||||| | |||||||  ||||||||||||||| |||| ||||||||||||||||| |||| ||||||||| | |||     
T  30972484 tataacattgtatagctctagtgattctcaacgctatgaccgtttattaacctctgaagctaactgagattcacagagctataacttcctatatcatca- 30972386  T
Q  286 cactttacgttccaaactcttgaccctttcaccggtaagtgctt---------cctatatctaacaaacattttccactcccttaccgtgtcactcgata 376  Q
     ||| ||| ||  | ||||||||| |||||||||||||||||||            | |||||| ||||||||||||||||||| || | ||||| ||||    
T  30972385 -actctacattaaagactcttgactctttcaccggtaagtgcttaagggaaaattcacatctaataaacattttccactcccttgccctatcacttgata 30972287  T
Q  377 aaggagctataacattagaa 396  Q
    ||||||||||||||||||||    
T  30972286 aaggagctataacattagaa 30972267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 195 - 396
Target Start/End: Complemental strand, 30980089 - 30979881
Alignment:
Q  195 gtatggctctagtgattcttagcgctatggacgtttattaacctcttaagccaactgagattcacagagttatagcttcctatagcttcaacactttacg 294  Q
    |||| |||||||||||||| | |||||||| ||||||||||||| |||||| ||||||||  |||| |  |||||||||||||| |  ||  ||| ||||    
T  30980089 gtatagctctagtgattctaaacgctatggccgtttattaaccttttaagctaactgagacccacataactatagcttcctatatcacca--actatacg 30979992  T
Q  295 ttccaaactcttgaccctttcaccggtaagtgctt-----cctat----atctaacaaacattttccactcccttaccgtgtcactcgataaaggagcta 385  Q
    ||  | |||||||||||||||||||||||||||||     |  ||    |||||| ||| |||||||||||||||||| | ||||| ||||| |||||||    
T  30979991 ttaaagactcttgaccctttcaccggtaagtgcttaagggcaaattcacatctaataaatattttccactcccttaccctatcacttgataagggagcta 30979892  T
Q  386 taacattagaa 396  Q
    |||||||||||    
T  30979891 taacattagaa 30979881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 85 - 147
Target Start/End: Complemental strand, 30972608 - 30972546
Alignment:
Q  85 cgatcacggtacttaacacgcacaatttgtaggttcaggtgcccgacctttccacttgagggt 147  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||||||||| || ||||||    
T  30972608 cgatcacggtacataacacgcacaatttgtaggttcaggtacccgacctttccgctggagggt 30972546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 391 - 447
Target Start/End: Complemental strand, 30979830 - 30979774
Alignment:
Q  391 ttagaataaagctcgccgctacaactttatatatcgcaagtaaattaataaatcata 447  Q
    ||||||||||||  | || ||||||||||||||||||||||||||||||||||||||    
T  30979830 ttagaataaagcatggcgatacaactttatatatcgcaagtaaattaataaatcata 30979774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 89 - 167
Target Start/End: Complemental strand, 30980218 - 30980140
Alignment:
Q  89 cacggtacttaacacgcacaatttgtaggttcaggtgcccgacctttccacttgagggtgtaaggttatcagatcctat 167  Q
    ||||||| ||||||| |||| |||||||| ||||||||||||||||| | ||||||||| | | | |||||||||||||    
T  30980218 cacggtatttaacacacacagtttgtaggatcaggtgcccgaccttttcgcttgagggtattaagctatcagatcctat 30980140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 391 - 500
Target Start/End: Complemental strand, 5370237 - 5370130
Alignment:
Q  391 ttagaataaagctcgccgctacaactttatatatcgcaagtaaattaataaatcataacccctccatgtctaaaccacttgaaggggtttagctcatggt 490  Q
    |||||| ||||||||  | |||| |||||||||| |||||||||| ||  | ||| |||| | ||||||||||||||   |||| ||||||||| |||||    
T  5370237 ttagaaaaaagctcggtgatacagctttatatattgcaagtaaataaa--agtcacaacctcaccatgtctaaaccaaaagaagaggtttagctaatggt 5370140  T
Q  491 gagctgaacc 500  Q
    ||||||||||    
T  5370139 gagctgaacc 5370130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 456 - 591
Target Start/End: Original strand, 33855815 - 33855951
Alignment:
Q  456 atgtctaaaccacttgaaggggtttagctcatggtgagctgaaccatggaaatggaaatg-agatggaaataaatgaaaacatagaaa-ctaaattaata 553  Q
    |||||||||||||  |||||| |||||||||||||||| ||||||    | ||| | ||| ||||  | ||||||||||||||  ||| ||||||| |||    
T  33855815 atgtctaaaccacaagaaggg-tttagctcatggtgagttgaacctcaaagatgaagatggagataaacataaatgaaaacatgaaaagctaaattgata 33855913  T
Q  554 gaatagatagagttgtcacaagattacaatccttgaag 591  Q
    || ||||||||| |   |||||||||||||||||||||    
T  33855914 gattagatagagctagtacaagattacaatccttgaag 33855951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 131; Significance: 1e-67; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 407 - 603
Target Start/End: Original strand, 15258268 - 15258466
Alignment:
Q  407 cgctacaactttatatatcgcaagtaaattaataaatcataacccctccatgtctaaaccacttgaaggggtttagctcatggtgagctgaaccatggaa 506  Q
    |||||||||||||||||||||||||||||||||||||||||||  | ||||||||||| ||||  |||||||||||||||||||||| ||||| ||||||    
T  15258268 cgctacaactttatatatcgcaagtaaattaataaatcataacttcaccatgtctaaatcactcaaaggggtttagctcatggtgagatgaactatggaa 15258367  T
Q  507 atggaaatg-agatggaaataaatgaaaacatag-aaactaaattaatagaatagatagagttgtcacaagattacaatccttgaaggaataaggtgag 603  Q
    ||||||||| ||||| | |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  15258368 atggaaatgaagatgaagataaatgaaagcatagaaaactaaattaatagaatagatagagttgtcacaagattacactctttgaaggaataaggtgag 15258466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 471 - 590
Target Start/End: Complemental strand, 16072995 - 16072875
Alignment:
Q  471 gaaggggtttagctcatggtgagctgaaccatggaaatggaaatg-agatggaaataaatgaaaacatag-aaactaaattaatagaatagatagagttg 568  Q
    ||||||||||| ||||||||||||||||||||| |||| |||||| ||||| | ||||||| |||||||| |||||||||| ||||| || ||||||||     
T  16072995 gaaggggtttaactcatggtgagctgaaccatgaaaattgaaatgaagatgaacataaatggaaacatagaaaactaaattgatagattaaatagagtta 16072896  T
Q  569 tcacaagattacaatccttgaa 590  Q
     |||||| ||||||||| ||||    
T  16072895 gcacaag-ttacaatccatgaa 16072875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 279
Target Start/End: Original strand, 15257961 - 15258062
Alignment:
Q  178 tactgagctataacgtggtatggctctagtgattcttagcgctatggacgtttattaacctcttaagccaactgagattcacagagttatagcttcctat 277  Q
    |||| ||||||| |||||||||  | | |||||||| | | ||||||   ||| |||||||||||||||||||||||||||||||| |||| ||||||||    
T  15257961 tactaagctatagcgtggtatgcatatggtgattctcaacactatggctatttgttaacctcttaagccaactgagattcacagagatataacttcctat 15258060  T
Q  278 ag 279  Q
    ||    
T  15258061 ag 15258062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 454 - 594
Target Start/End: Original strand, 37378945 - 37379087
Alignment:
Q  454 ccatgtctaaaccacttgaaggggtttagctcatggtgagctgaaccatggaaatggaaatg-agatggaaataaatgaaaacatag-aaactaaattaa 551  Q
    |||||||||||||||   |||||||||||||||||||||| ||||||   || ||||| ||| | ||  | |||| | ||||||| | |||||||||| |    
T  37378945 ccatgtctaaaccacaaaaaggggtttagctcatggtgagatgaacctcagagatggagatgaaaataaacataagtaaaaacatggaaaactaaattga 37379044  T
Q  552 tagaatagatagagttgtcacaagattacaatccttgaaggaa 594  Q
    |||| || |||||| |   ||||||||||||||||||||||||    
T  37379045 tagattaaatagagctagtacaagattacaatccttgaaggaa 37379087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 130; Significance: 5e-67; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 410 - 603
Target Start/End: Complemental strand, 17596723 - 17596530
Alignment:
Q  410 tacaactttatatatcgcaagta-aattaataaatcataacccctccatgtctaaaccacttgaaggggtttagctcatggtgagctgaaccatggaaat 508  Q
    |||||||||||||||||||  || |||||| ||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  17596723 tacaactttatatatcgca--tacaattaacaaatcataacctcaccatgtttaaaccacttgaaggggtttagctcatggtgagctgaaccatggaaat 17596626  T
Q  509 ggaaatg-agatggaaataaatgaaaacatag-aaactaaattaatagaatagatagagttgtcacaagattacaatccttgaaggaataaggtgag 603  Q
    ||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  17596625 ggaaatgaagatggaaataaatgaaaacatagaaaactaaatgaatagaatagatagagttgtcacgagattacaatcctt-aaggaataaggtgag 17596530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 442 - 500
Target Start/End: Complemental strand, 15878009 - 15877951
Alignment:
Q  442 atcataacccctccatgtctaaaccacttgaaggggtttagctcatggtgagctgaacc 500  Q
    ||||||||| | |||||||||||||||  ||||||||||||||||||||||||||||||    
T  15878009 atcataacctcaccatgtctaaaccacaagaaggggtttagctcatggtgagctgaacc 15877951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 454 - 537
Target Start/End: Complemental strand, 21502121 - 21502037
Alignment:
Q  454 ccatgtctaaaccacttgaaggggtttagctcatggtgagctgaaccatggaaatggaaatgagatggaa-ataaatgaaaacat 537  Q
    |||||||||||||||  |||||||||||||||||||||||| |||||| | | ||||| |||| ||  || ||||||||||||||    
T  21502121 ccatgtctaaaccacaagaaggggtttagctcatggtgagcagaaccaagaagatggagatgaaataaaacataaatgaaaacat 21502037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 604 - 687
Target Start/End: Complemental strand, 30746738 - 30746656
Alignment:
Q  604 atctcaaaagttgttaatcctagccgtaacccggtctctccaattataaaatgaattatcggacccttggcactaacacatggg 687  Q
    ||||| ||| ||||||| ||||||||||||| ||  ||||||||| ||  ||||||| ||||| ||||||||||||||||||||    
T  30746738 atctctaaatttgttaaccctagccgtaacctggcatctccaattctatgatgaattttcgga-ccttggcactaacacatggg 30746656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 604 - 687
Target Start/End: Complemental strand, 30768189 - 30768107
Alignment:
Q  604 atctcaaaagttgttaatcctagccgtaacccggtctctccaattataaaatgaattatcggacccttggcactaacacatggg 687  Q
    ||||| ||| ||||||| ||||||||||||| ||  ||||||||| ||  ||||||| ||||| ||||||||||||||||||||    
T  30768189 atctctaaatttgttaaccctagccgtaacctggcatctccaattctatgatgaattttcgga-ccttggcactaacacatggg 30768107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 442 - 501
Target Start/End: Complemental strand, 33079020 - 33078961
Alignment:
Q  442 atcataacccctccatgtctaaaccacttgaaggggtttagctcatggtgagctgaacca 501  Q
    ||||||||| | || ||||||||||||  ||||||||||||||||||||||| |||||||    
T  33079020 atcataacctcaccgtgtctaaaccacaagaaggggtttagctcatggtgagatgaacca 33078961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 600 - 682
Target Start/End: Complemental strand, 30748076 - 30747995
Alignment:
Q  600 tgagatctcaaaagttgttaatcctagccgtaacccggtctctccaattataaaatgaattatcggacccttggcactaacac 682  Q
    ||||||||| ||| ||||||| ||||||||||||| || |||||||||| ||| ||||||| || || |||||||| ||||||    
T  30748076 tgagatctctaaatttgttaaccctagccgtaacctggcctctccaattctaagatgaattttccga-ccttggcattaacac 30747995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 600 - 682
Target Start/End: Complemental strand, 30769527 - 30769446
Alignment:
Q  600 tgagatctcaaaagttgttaatcctagccgtaacccggtctctccaattataaaatgaattatcggacccttggcactaacac 682  Q
    ||||||||| ||| ||||||| ||||||||||||| || |||||||||| ||| ||||||| || || |||||||| ||||||    
T  30769527 tgagatctctaaatttgttaaccctagccgtaacctggcctctccaattctaagatgaattttccga-ccttggcattaacac 30769446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 456 - 555
Target Start/End: Original strand, 19882992 - 19883093
Alignment:
Q  456 atgtctaaaccacttgaaggggtttagctcatggtgagctgaaccatggaaatggaaatg-agatggaaataaatgaaaacatag-aaactaaattaata 553  Q
    |||||||||| ||  ||||||||||||||||||||||||||||| |  || ||| | ||| | ||  |||||||||||||||||| |||||||||| |||    
T  19882992 atgtctaaactacaagaaggggtttagctcatggtgagctgaactacagagatgaagatgaaaataaaaataaatgaaaacatagaaaactaaattgata 19883091  T
Q  554 ga 555  Q
    ||    
T  19883092 ga 19883093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 600 - 688
Target Start/End: Complemental strand, 17596448 - 17596358
Alignment:
Q  600 tgagatctcaaaagttgttaatcctagccgtaacccggtc--tctccaattataaaatgaattatcggacccttggcactaacacatgggt 688  Q
    ||||||||| |||| |  ||| ||||||||||||| || |  | ||||||| ||| ||||||| | |||||||||||||||||||||||||    
T  17596448 tgagatctctaaagctactaaccctagccgtaacctggaccttttccaattctaagatgaatttttggacccttggcactaacacatgggt 17596358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 499
Target Start/End: Original strand, 26780252 - 26780333
Alignment:
Q  415 ctttatatatcgcaagtaaattaataaatcataacccctccatgtctaaaccacttgaaggggtttagctcatggtgagctgaac 499  Q
    ||||||||||||||| ||||| |||   |||||||| | ||||| |||||||||  ||||||||||||||||| ||||| |||||    
T  26780252 ctttatatatcgcaaataaat-aatg--tcataacctcaccatggctaaaccacgagaaggggtttagctcatagtgagttgaac 26780333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 117; Significance: 3e-59; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 433 - 603
Target Start/End: Complemental strand, 9274053 - 9273881
Alignment:
Q  433 aattaataaatcataacccctccatgtctaaaccacttgaaggggtttagctcatggtgagctgaaccatggaaatggaaatga-gatggaaataaatga 531  Q
    |||||||||||||||||| | |||||||||||||| || |||||||||||||| |||||| ||||||||| ||||||||||||| |||||||| ||||||    
T  9274053 aattaataaatcataacctcgccatgtctaaaccatttaaaggggtttagctcgtggtgacctgaaccatagaaatggaaatgaagatggaaacaaatga 9273954  T
Q  532 aaacatagaaa-ctaaattaatagaatagatagagttgtcacaagattacaatccttgaaggaataaggtgag 603  Q
    ||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  9273953 aaacatagaaaactaaattaatagaatagatcgagttgtcgcaagattacaatccttgaaggaataaggtgag 9273881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 419 - 603
Target Start/End: Complemental strand, 9254094 - 9253910
Alignment:
Q  419 atatatcgcaagtaaattaataaatcataacccctccatgtctaaaccacttgaaggggtttagctcatggtgagctgaaccatggaaatggaaatga-g 517  Q
    ||||||| ||||||| ||||||||||| |||| | |||||||||||||| || |||| ||||||||||||||||  |||||||| ||||||||||||| |    
T  9254094 atatatcacaagtaa-ttaataaatcagaacctcaccatgtctaaaccatttaaaggtgtttagctcatggtgacttgaaccatagaaatggaaatgaag 9253996  T
Q  518 atggaaataaatgaaaacatagaaactaaattaatagaatagatagagttgtcacaagattacaatccttgaaggaataaggtgag 603  Q
    ||||||  |||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||    
T  9253995 atggaagcaaatgaaaacatagaaactaaattaatagaataggtagagttatcgcaagattacaatccttgaaggaataaggtgag 9253910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 407 - 600
Target Start/End: Complemental strand, 8912376 - 8912181
Alignment:
Q  407 cgctacaactttatatatcgcaagtaaattaataaatcataacccctccatgtctaaaccacttgaaggggtttagctcatggtgagctgaaccatggaa 506  Q
    |||||||||||||||||||| ||  ||||||||||||||||||| |   |||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  8912376 cgctacaactttatatatcgtaacgaaattaataaatcataaccgcaagatgtctaaaccactcgaagggttttagctcatggtgagctgaaccatggaa 8912277  T
Q  507 atggaaatg-agatggaaataaatgaaaacatag-aaactaaattaatagaatagatagagttgtcacaagattacaatccttgaaggaataaggt 600  Q
    ||||||||| ||||| | |||| |||||| |||| ||||||||||||| |||||  |||||||||||||||| |||||||||| ||||||||||||    
T  8912276 atggaaatgaagatgaagataattgaaaatatagaaaactaaattaattgaataagtagagttgtcacaagactacaatccttaaaggaataaggt 8912181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 390 - 593
Target Start/End: Original strand, 11489208 - 11489414
Alignment:
Q  390 attagaataaagctcgccgctacaactt-tatatatcgcaagtaaattaataaatcataacccctccatgtctaaaccacttgaaggggtttagctcatg 488  Q
    |||||| |||| ||||  ||||||| || |||| ||| ||||||||| |||||||||||||| | ||| |||||||||||  ||||||||||||||||||    
T  11489208 attagagtaaatctcggtgctacaatttatatagatcacaagtaaataaataaatcataacctcaccaagtctaaaccacgagaaggggtttagctcatg 11489307  T
Q  489 gtgagctgaaccatggaaatggaaatg-agatggaaataaatgaaaacatag-aaactaaattaatagaatagatagagttgtcacaagattacaatcct 586  Q
    ||||| ||||||||||||||||||||| ||||| | ||||||||||| || | |||||||||| |||||  | ||| ||||  |||||||||||||||||    
T  11489308 gtgagatgaaccatggaaatggaaatgaagatgaacataaatgaaaatatggaaaactaaattgatagatcaaatacagttagcacaagattacaatcct 11489407  T
Q  587 tgaagga 593  Q
    |||||||    
T  11489408 tgaagga 11489414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 409 - 593
Target Start/End: Complemental strand, 5067053 - 5066867
Alignment:
Q  409 ctacaactttatatatcgcaagtaaattaataaatcataacccctccatgtctaaaccacttgaaggggtttagctcatggtgagctgaaccatggaaat 508  Q
    |||||||||||||||||||| |||||| |||||||||||||  |  |||||||||||||||  || | |||||| | |  ||||||||||||||||||||    
T  5067053 ctacaactttatatatcgcaggtaaataaataaatcataacatcatcatgtctaaaccactataacgagtttaggttacagtgagctgaaccatggaaat 5066954  T
Q  509 ggaaat-gagatggaaataaatgaaaacatag-aaactaaattaatagaatagatagagttgtcacaagattacaatccttgaagga 593  Q
    ||||||  ||||  | |||||| ||||||||| |||||||||| ||||| || ||||||||  | || |||||||||||||||||||    
T  5066953 ggaaatcaagataaacataaatcaaaacatagaaaactaaattgatagattaaatagagttagctcatgattacaatccttgaagga 5066867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 408 - 500
Target Start/End: Complemental strand, 20570721 - 20570632
Alignment:
Q  408 gctacaactttatatatcgcaagtaaattaataaatcataacccctccatgtctaaaccacttgaaggggtttagctcatggtgagctgaacc 500  Q
    |||| ||||||||||||||||||||||   | | ||||||||| | |||||||||||||||  ||||| |||||||||||| |||| ||||||    
T  20570721 gctataactttatatatcgcaagtaaa---agatatcataacctcaccatgtctaaaccacaagaaggtgtttagctcatgatgagttgaacc 20570632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 228 - 278
Target Start/End: Complemental strand, 8912616 - 8912566
Alignment:
Q  228 tttattaacctcttaagccaactgagattcacagagttatagcttcctata 278  Q
    |||||||||||||||||| |||||||||| ||||||  |||||||||||||    
T  8912616 tttattaacctcttaagctaactgagattaacagagcaatagcttcctata 8912566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 415 - 500
Target Start/End: Complemental strand, 51461809 - 51461727
Alignment:
Q  415 ctttatatatcgcaagtaaattaataaatcataacccctccatgtctaaaccacttgaaggggtttagctcatggtgagctgaacc 500  Q
    |||||||||||||| |||||   | | ||||||||||  | ||| |||||||||  ||||||||||||||||||||||| ||||||    
T  51461809 ctttatatatcgcacgtaaa---aaatatcataaccctacgatgcctaaaccacaagaaggggtttagctcatggtgagttgaacc 51461727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 113; Significance: 7e-57; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 409 - 603
Target Start/End: Complemental strand, 16253311 - 16253115
Alignment:
Q  409 ctacaactttatatatcgcaagtaaattaataaatcataacccctccatgtctaaaccacttgaaggggtttagctcatggtgagctgaaccatggaaat 508  Q
    ||||||||||||||||| ||||||||| |||||||||||| | | |||||||||||||||| |||| ||||||| ||| |||||| |||||||| |||||    
T  16253311 ctacaactttatatatcacaagtaaataaataaatcataatctcaccatgtctaaaccactagaagaggtttagttcaaggtgagttgaaccattgaaat 16253212  T
Q  509 ggaaa-tgagatggaaataaatgaaaacatag-aaactaaattaatagaatagatagagttgtcacaagattacaatccttgaaggaataaggtgag 603  Q
    ||||| | ||||| | |||||||||||||||| |||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  16253211 ggaaattaagatgaacataaatgaaaacatagaaaactaaattgatagattagatagagttgtcataagattacaatccttgaaggaataaggtgag 16253115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 397 - 600
Target Start/End: Original strand, 16301169 - 16301373
Alignment:
Q  397 taaagctcgccgctacaactttatatatcgcaagtaaattaataaatcataacccctccatgtctaaaccacttgaaggggtttagctcatggtgagctg 496  Q
    |||||| || ||||||||||||||||||| ||||||||| |||||||||||| | | ||||||||||||||||  ||  ||||||||||| |||||| ||    
T  16301169 taaagcacggcgctacaactttatatatcacaagtaaataaataaatcataatctcaccatgtctaaaccactataataggtttagctcaaggtgagttg 16301268  T
Q  497 aaccatggaaatggaaatg-agatggaaataaatgaaaacatagaaactaaattaatagaatagatagagttgtcacaagattacaatccttgaaggaat 595  Q
    |||||| |||||||||||| ||||| | ||||||||||||||| ||| |||||| ||| | |||||||||||||||||||||||||||||||||||||||    
T  16301269 aaccattgaaatggaaatgaagatgaatataaatgaaaacataaaaaataaattgataaattagatagagttgtcacaagattacaatccttgaaggaat 16301368  T
Q  596 aaggt 600  Q
    |||||    
T  16301369 aaggt 16301373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 398 - 590
Target Start/End: Original strand, 5056970 - 5057164
Alignment:
Q  398 aaagctcgccgctacaactttatatatcgcaagtaaattaataaatcataacccctccatgtctaaaccacttgaaggggtttagctcatggtgagctga 497  Q
    |||||||| |||||||||||||||||| |||||||||| ||||||  |||||| | ||||| |||||||||  | | ||||||||||||||||||| |||    
T  5056970 aaagctcggcgctacaactttatatattgcaagtaaataaataaactataacctcaccatgcctaaaccacaaggatgggtttagctcatggtgagatga 5057069  T
Q  498 accatggaaatggaaatgag-atggaaataaatgaaaacatagaaa-ctaaattaatagaatagatagagttgtcacaagattacaatccttgaa 590  Q
    |||| | | ||||||||||  ||  | ||||||||||||||||||| ||||||| ||||| || ||| ||||   ||||||||||||||||||||    
T  5057070 accacgaagatggaaatgaatataaacataaatgaaaacatagaaaactaaattgatagattaaatatagttaggacaagattacaatccttgaa 5057164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 441 - 500
Target Start/End: Complemental strand, 23627925 - 23627866
Alignment:
Q  441 aatcataacccctccatgtctaaaccacttgaaggggtttagctcatggtgagctgaacc 500  Q
    |||||||||| | | |||||||||||||  ||||||||||||||||| ||||||| ||||    
T  23627925 aatcataacctcactatgtctaaaccacaagaaggggtttagctcatagtgagcttaacc 23627866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 273
Target Start/End: Complemental strand, 16253585 - 16253524
Alignment:
Q  212 cttagcgctatggacgtttattaacctcttaagccaactgagattcacagagttatagcttc 273  Q
    |||||| |||||| | |||||||||||||||||  || |||||||||||||| |||| ||||    
T  16253585 cttagcactatggccatttattaacctcttaagtgaattgagattcacagagctataacttc 16253524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 273
Target Start/End: Original strand, 16300907 - 16300968
Alignment:
Q  212 cttagcgctatggacgtttattaacctcttaagccaactgagattcacagagttatagcttc 273  Q
    |||||| |||||| | |||||||||||||||||  ||||  ||||||||||| |||||||||    
T  16300907 cttagcactatggccatttattaacctcttaagttaactatgattcacagagctatagcttc 16300968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 454 - 511
Target Start/End: Original strand, 18398749 - 18398806
Alignment:
Q  454 ccatgtctaaaccacttgaaggggtttagctcatggtgagctgaaccatggaaatgga 511  Q
    ||||||||||||||   |||| ||||||||||||||||||||||| | | ||||||||    
T  18398749 ccatgtctaaaccataagaagaggtttagctcatggtgagctgaatcgtagaaatgga 18398806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 113; Significance: 7e-57; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 390 - 603
Target Start/End: Original strand, 32202676 - 32202895
Alignment:
Q  390 attagaataaagctcgccgctacaactttatatatcgcaagtaaattaataaatcataacccctccatgtc-----taaaccacttgaaggggtttagct 484  Q
    |||||| |||||| || ||||||||||||||||||| ||||| || ||||||||||||||| | | |||||     ||||||||| ||||||||||||||    
T  32202676 attagagtaaagcacgacgctacaactttatatatcacaagt-aactaataaatcataacctcactatgtctaaattaaaccactcgaaggggtttagct 32202774  T
Q  485 catggtgagctgaaccatggaaatggaaatg-agatggaaataaatgaaaacatag-aaactaaattaatagaatagatagagttgtcacaagattacaa 582  Q
    ||||||||| |||||||| |||||| ||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||    
T  32202775 catggtgagttgaaccatagaaatgaaaatgaagatggaaataaatgaaaacatagaaaactatattaatagaatagatagagttgtcaaaagattacaa 32202874  T
Q  583 tccttgaaggaataaggtgag 603  Q
    ||||| || ||||||||||||    
T  32202875 tccttaaatgaataaggtgag 32202895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 485 - 603
Target Start/End: Original strand, 16220953 - 16221076
Alignment:
Q  485 catggtgagctgaaccatggaaatggaaatg-agatggaaataaatgaaaa--catagaaa-ctaaattaatagaatagatagag-ttgtcacaagatta 579  Q
    |||||||||||||||||||||| ||||| || |||||||||||||  ||||  |||||||| ||||| |||||| ||| |||||| |||||||| |||||    
T  16220953 catggtgagctgaaccatggaattggaattgaagatggaaataaaaaaaaaaccatagaaatctaaagtaatagtatatatagagtttgtcacatgatta 16221052  T
Q  580 caatccttgaaggaataaggtgag 603  Q
    || ||||| |||||||| ||||||    
T  16221053 cattccttaaaggaatatggtgag 16221076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 399 - 501
Target Start/End: Complemental strand, 3256042 - 3255942
Alignment:
Q  399 aagctcgccgctacaactttatatatcgcaagtaaattaataaatcataacccctccatgtctaaaccacttgaaggggtttagctcatggtgagctgaa 498  Q
    ||||||| ||||| ||||||| ||||||||||||||| ||    |||||||  | |||||||||||||||  ||||||||||||||||||||||| ||||    
T  3256042 aagctcgacgctaaaactttacatatcgcaagtaaataaagg--tcataacgtcaccatgtctaaaccacaagaaggggtttagctcatggtgagatgaa 3255945  T
Q  499 cca 501  Q
    |||    
T  3255944 cca 3255942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 415 - 491
Target Start/End: Original strand, 16218196 - 16218271
Alignment:
Q  415 ctttatatatcgcaagtaaattaataaatcataacccctccatgtctaaaccacttgaaggggtttagctcatggtg 491  Q
    |||||||||||| |||||| |||||||||||||||| |  |||||| ||| ||||  ||||||||||||||||||||    
T  16218196 ctttatatatcgtaagtaa-ttaataaatcataacctcatcatgtccaaatcactcaaaggggtttagctcatggtg 16218271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 217 - 279
Target Start/End: Original strand, 16217938 - 16218001
Alignment:
Q  217 cgctatggacgtttattaacctcttaagccaactga-gattcacagagttatagcttcctatag 279  Q
    |||||||| |||||||||||||| ||||| ||| || ||||||||||| |||||||||||||||    
T  16217938 cgctatggtcgtttattaacctcctaagctaaccgatgattcacagagatatagcttcctatag 16218001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 399 - 594
Target Start/End: Complemental strand, 33797914 - 33797722
Alignment:
Q  399 aagctcgccgctacaactttatatatcgcaagtaaattaataaatcataacccctccatgtctaaaccacttgaaggggtttagctcatggtgagctgaa 498  Q
    ||||||| | ||| ||||||||||||||||||||||  |||   ||||||||   ||||| |||| |||| |||||||||||| ||||||||||| ||||    
T  33797914 aagctcgactctataactttatatatcgcaagtaaag-aatg--tcataaccttaccatgcctaagccacatgaaggggtttaactcatggtgagttgaa 33797818  T
Q  499 ccatggaaatggaaatgagatggaaa-taaatgaaaacatagaaac-taaattaatagaatagatagagttgtcacaagattacaatccttgaaggaa 594  Q
    ||   || || ||  ||| ||  ||| ||||||||||||||||||  |||||| ||||| || ||||||||   | ||||||||||||||||||||||    
T  33797817 cctcagatataga--tgaaattaaaaataaatgaaaacatagaaaagtaaattgatagattaaatagagttagtataagattacaatccttgaaggaa 33797722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 211 - 268
Target Start/End: Complemental strand, 4781108 - 4781051
Alignment:
Q  211 tcttagcgctatggacgtttattaacctcttaagccaactgagattcacagagttata 268  Q
    ||||||||| || | |||||||||||||||||||  ||||||||||||||||| ||||    
T  4781108 tcttagcgcaatagccgtttattaacctcttaagttaactgagattcacagagctata 4781051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 442 - 498
Target Start/End: Complemental strand, 3283731 - 3283675
Alignment:
Q  442 atcataacccctccatgtctaaaccacttgaaggggtttagctcatggtgagctgaa 498  Q
    ||||||||| | |||||||||||||||  | ||||||||| ||||||||||||||||    
T  3283731 atcataacctcaccatgtctaaaccacaaggaggggtttaactcatggtgagctgaa 3283675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 443 - 498
Target Start/End: Complemental strand, 3257350 - 3257295
Alignment:
Q  443 tcataacccctccatgtctaaaccacttgaaggggtttagctcatggtgagctgaa 498  Q
    |||||||| | |||||||||||||||  | ||||||||||||||||||||| ||||    
T  3257350 tcataacctcaccatgtctaaaccacaaggaggggtttagctcatggtgagatgaa 3257295  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 443 - 498
Target Start/End: Complemental strand, 3270530 - 3270475
Alignment:
Q  443 tcataacccctccatgtctaaaccacttgaaggggtttagctcatggtgagctgaa 498  Q
    |||||||| | ||||||||| |||||  | ||||||||||||||||||||||||||    
T  3270530 tcataacctcaccatgtctataccacaaggaggggtttagctcatggtgagctgaa 3270475  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 278
Target Start/End: Complemental strand, 896559 - 896498
Alignment:
Q  217 cgctatggacgtttattaacctcttaagccaactgagattcacagagttatagcttcctata 278  Q
    |||||||| || ||||||||||||||||| || |||| || || |||||||||||| |||||    
T  896559 cgctatggccgcttattaacctcttaagctaattgaggtttaccgagttatagctttctata 896498  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 272
Target Start/End: Original strand, 32202451 - 32202496
Alignment:
Q  227 gtttattaacctcttaagccaactgagattcacagagttatagctt 272  Q
    ||||||||| ||||||||  ||||||||||||||||| ||||||||    
T  32202451 gtttattaatctcttaagttaactgagattcacagagctatagctt 32202496  T

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Target: chr6 (Bit Score: 102; Significance: 3e-50; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 455 - 603
Target Start/End: Original strand, 6633087 - 6633236
Alignment:
Q  455 catgtctaaaccacttgaaggggtttagctcatggtgagctgaaccatggaaatggaaatga-gatggaaataaatgaaaacatagaaactaaattaata 553  Q
    |||||||||||||||  |||| ||||| |||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  6633087 catgtctaaaccactcaaaggtgtttaactcatgatgagttgaaccatggaaatggaaatgaagatggaaataaatgaaaacatagaaactaaattaata 6633186  T
Q  554 gaatagatagagttgtcacaagattacaatccttgaaggaataaggtgag 603  Q
     |||||| ||||||| |||||||||| |||||||||||||||||||||||    
T  6633187 taatagacagagttgccacaagattataatccttgaaggaataaggtgag 6633236  T

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Target: chr6; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 412 - 597
Target Start/End: Complemental strand, 18626946 - 18626762
Alignment:
Q  412 caactttatatatcgcaagtaaattaataaatcataacccctccatgtctaaaccacttgaaggggtttagctcatggtgagctgaaccatggaaatgga 511  Q
    |||||||||||||||||| ||| |||||||||||||||  | ||| ||||||||||||| || ||||||||||| | |||||||||||||||||||||||    
T  18626946 caactttatatatcgcaaataa-ttaataaatcataacttcacca-gtctaaaccactttaaagggtttagctcctagtgagctgaaccatggaaatgga 18626849  T
Q  512 aatg-agatggaaataaatgaaaacatag-aaactaaattaatagaatagatagagttgtcacaagattacaatccttgaaggaataa 597  Q
    |||| |||||||||||||| |||| |||| ||| |||||||||| ||||||||||||||||||||||||||||||||| || ||||||    
T  18626848 aatgaagatggaaataaataaaaatatagaaaaataaattaata-aatagatagagttgtcacaagattacaatcctttaaagaataa 18626762  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 604 - 688
Target Start/End: Complemental strand, 18626676 - 18626592
Alignment:
Q  604 atctcaaaagttgttaatcctagccgtaacccggtctctccaattataaaatgaattatcggacccttggcactaacacatgggt 688  Q
    ||||| ||||||| ||| |||||| |||||| || ||||||||||||||  |||||| ||| |||||||||||||||||||||||    
T  18626676 atctctaaagttgataaccctagctgtaacctggcctctccaattataaggtgaattttcgaacccttggcactaacacatgggt 18626592  T

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Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 622 - 690
Target Start/End: Original strand, 6633340 - 6633408
Alignment:
Q  622 cctagccgtaacccggtctctccaattataaaatgaattatcggacccttggcactaacacatgggtat 690  Q
    ||||||||||||  || |||||||||| ||| ||||||| |||||| ||||||||||||||||||||||    
T  6633340 cctagccgtaacatggcctctccaattctaagatgaattttcggacacttggcactaacacatgggtat 6633408  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 279
Target Start/End: Original strand, 12602394 - 12602467
Alignment:
Q  206 gtgattcttagcgctatggacgtttattaacctcttaagccaactgagattcacagagttatagcttcctatag 279  Q
    |||||||| ||| |||||   ||||||||||||||||||| || |||||||||||||   ||||||||||||||    
T  12602394 gtgattctcagcactatgactgtttattaacctcttaagctaattgagattcacagaaccatagcttcctatag 12602467  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 492
Target Start/End: Original strand, 18714320 - 18714394
Alignment:
Q  416 tttatatatcgcaagtaaattaataaatcataacccctccatgtctaaaccacttgaaggggtttagctcatggtga 492  Q
    |||||||||||||||||||| |||  ||||||| | | || ||||||||| ||  |||||||||||| |||||||||    
T  18714320 tttatatatcgcaagtaaataaat--atcataaactcaccttgtctaaacaacaagaaggggtttaggtcatggtga 18714394  T

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Target: chr5 (Bit Score: 86; Significance: 9e-41; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 407 - 599
Target Start/End: Original strand, 24884578 - 24884765
Alignment:
Q  407 cgctacaactttatatatcgcaagtaaattaataaatcataacccctccatgtctaaaccacttgaaggggtttagctcatggtgagctgaaccatggaa 506  Q
    ||||| |||||| |||||| |||| || |||||||||||||||| | |||||||||||||||| || |||||| | ||| || ||| |||||||||||||    
T  24884578 cgctaaaactttgtatatcacaagcaa-ttaataaatcataacctcaccatgtctaaaccactagatggggttcatctcttgatgaactgaaccatggaa 24884676  T
Q  507 atggaaatgagatggaaataaatgaaaacatagaa-actaaattaatagaatagatagagttgtcacaagattacaatccttgaaggaataagg 599  Q
    ||| |     ||||||||||||||||||| ||||| | |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  24884677 atgaa-----gatggaaataaatgaaaacgtagaatattaaactaatagaatagatagagttgtcacaagattataatccttgaaggaataagg 24884765  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 442 - 593
Target Start/End: Complemental strand, 23361677 - 23361525
Alignment:
Q  442 atcataacccctccatgtctaaaccacttgaaggggtttagctcatggtgagctgaaccatggaaatggaaatgagatggaa-ataaatgaaaacataga 540  Q
    ||||||||| | |||||||||||||||  ||| |||||||||||||||||| ||||||| | || ||  | |||| ||| || ||||||||||||||  |    
T  23361677 atcataaccgcaccatgtctaaaccacaagaatgggtttagctcatggtgatctgaaccttagagataaatatgaaatgaaacataaatgaaaacatgaa 23361578  T
Q  541 aactaaattaatagaatagatagagttgtcacaagattacaatccttgaagga 593  Q
    ||||||||| |||||  | ||| || |   |||||||||||||||||||||||    
T  23361577 aactaaattgatagatgaaatatagctagtacaagattacaatccttgaagga 23361525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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