View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18157_low_6 (Length: 690)
Name: NF18157_low_6
Description: NF18157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18157_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 260; Significance: 1e-144; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 107 - 655
Target Start/End: Complemental strand, 33080646 - 33080089
Alignment:
| Q |
107 |
ttatcgtaagcaaatttaacaaatctatttctttaatgtctcaggcatgatttaccacaaattaacacttcaattagcgttatatattctttatttaatg |
206 |
Q |
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| T |
33080646 |
ttatcataagaaaatttcacaaatatatttctttaatgtctcaggcatgattgcccacaaattaacacttcaattagcgtcatatattctttctttaatg |
33080547 |
T |
|
| Q |
207 |
tctcctacataattaacacttcaattgcagttatatattctttcaattgcagctatatttcttccttctttattacaaggaaatttaaccagctatttct |
306 |
Q |
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| T |
33080546 |
tctcatacataattatcacttcaattgcagttatatattctttcaattgcagctatgttacttcattctttattacatggaaatttaaccagctattt-t |
33080448 |
T |
|
| Q |
307 |
ttaatgtctccgacatgatgatggtttaaggtttagtgtttaac----acttcaattacagttataatatattctttctttaatttcttcgacacaatta |
402 |
Q |
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| T |
33080447 |
ttaacgtctcccacatgattagggtttacggtttagtgtttaattaaaacttcaattgcagttatagtatattgtttctttaatgcctttgacacgatta |
33080348 |
T |
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| Q |
403 |
tttatgaataattggcaaactagtttgtctattcaaagagatatagactgaagggtttgtcgtgtatttttt-------caaattttaatttcatttacc |
495 |
Q |
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| T |
33080347 |
tttatgaataattggcaaactagt---tctatacaaagagatataaactgaaggctttgtcatgcatttttttttcttccaaattttactttcatttact |
33080251 |
T |
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| Q |
496 |
tcttattgattgatacatctttctgattttctatacaatttgtactatttgatgtaagagtactatattcacatgaactgcatcaaatttgattttgtat |
595 |
Q |
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| T |
33080250 |
tctt----attgttatgtctttatgatttcctatacaatttgtattatttgatgtaagagtactatgttcacatgaactacatctactttaattttatat |
33080155 |
T |
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| Q |
596 |
ttgctaaggctattattgcttaa----catgatacatatactctgat--aagccaatatggttgat |
655 |
Q |
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| T |
33080154 |
ttgctaaggatattattgcttaacatgcatgatacatatactcacataaaagccaatatggttgat |
33080089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 221 - 265
Target Start/End: Complemental strand, 33095248 - 33095204
Alignment:
| Q |
221 |
aacacttcaattgcagttatatattctttcaattgcagctatatt |
265 |
Q |
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| T |
33095248 |
aacacttcaattgcagttatatattctttcaattgcagctatatt |
33095204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 148
Target Start/End: Complemental strand, 33095194 - 33095149
Alignment:
| Q |
103 |
ttccttatcgtaagcaaatttaacaaatctatttctttaatgtctc |
148 |
Q |
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| T |
33095194 |
ttcctgatcataagcaaatttagcaaatctatttctttaatgtctc |
33095149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 217 - 445
Target Start/End: Complemental strand, 22764696 - 22764468
Alignment:
| Q |
217 |
aattaacacttcaattgcagttatatattctttcaattgcagctatatttcttccttctttattacaaggaaatttaaccagctatttctttaatgtctc |
316 |
Q |
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| T |
22764696 |
aattaacacttcaattgcagttatatattctttcaattgcagctatatttcttccttctttattacaaggaaatttaaccagctatttctttaatgtctc |
22764597 |
T |
|
| Q |
317 |
cgacatgatgatggtttaaggtttagtgtttaacacttcaattacagttataatatattctttctttaatttcttcgacacaattatttatgaataattg |
416 |
Q |
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| T |
22764596 |
tgacatgatgagggtttaaggtttagtgtttaacacttcaattacagttataatatattctttctttaatttcttcgacacaattatttatgaataattg |
22764497 |
T |
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| Q |
417 |
gcaaactagtttgtctattcaaagagata |
445 |
Q |
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| T |
22764496 |
gcaaactagtttgtctatacaaagagata |
22764468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 109 - 198
Target Start/End: Complemental strand, 22764752 - 22764664
Alignment:
| Q |
109 |
atcgtaagcaaatttaacaaatctatttctttaatgtctcaggcatgatttaccacaaattaacacttcaattagcgttatatattcttt |
198 |
Q |
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| T |
22764752 |
atcgtaagcaaatttaacaaatctatttctttaatgtctcaggcatgattt-ccacaaattaacacttcaattgcagttatatattcttt |
22764664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 22765280 - 22765218
Alignment:
| Q |
15 |
catcactgaattttctccgttgctggttgattaaggtatcatttattagtttaccttcgaatt |
77 |
Q |
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| T |
22765280 |
catcactgaattttctccgttgctgattgattaaggtatcatttattagtttaccttcaaatt |
22765218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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