View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18158_high_7 (Length: 287)
Name: NF18158_high_7
Description: NF18158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18158_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 14 - 259
Target Start/End: Complemental strand, 24689598 - 24689351
Alignment:
| Q |
14 |
acagaacagaacatgcatttttgtgtataatag-agtctacacaatgtgtgagagaga--tatttcagaagttatgtgccaacatcaaactaagcagagt |
110 |
Q |
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| T |
24689598 |
acagaacagaacatgcatttt-gtgtataatagtagtctacatattgtgtgagagagagatatttcagaagttatgggccaacttcaaactaagcaaagt |
24689500 |
T |
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| Q |
111 |
tcagtttaggacaataaagttataaattataatacatggattccaaggaattcttcatgcttaatcaatcttatacatgaaaagtctaaaagactagctt |
210 |
Q |
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| T |
24689499 |
tcagtttaggacaataaaattataaattataatacatggattccaaggaattcttcatacttaattaaccttatacatgaaaagtctaaaaggctagctt |
24689400 |
T |
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| Q |
211 |
tccaaaagcttgagaacactggttcctgtttgagggaggggataggtag |
259 |
Q |
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| T |
24689399 |
tccaaaagcttgagaacactggttcctgtatgggggaggggataggtag |
24689351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 14 - 259
Target Start/End: Complemental strand, 24729171 - 24728938
Alignment:
| Q |
14 |
acagaacagaacatgcatttttgtgtataatagagtctacacaatgtgtgagagagatatttcagaagttatgtgccaacatcaaactaagcagagttca |
113 |
Q |
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| T |
24729171 |
acagaacagaacatgcatttttgtgtataatagagtctacacaatgtgtgagagagatat------------gtgccaacttcaaactaagcagagttca |
24729084 |
T |
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| Q |
114 |
gtttaggacaataaagttataaattataatacatggattccaaggaattcttcatgcttaatcaatcttatacatgaaaagtctaaaagactagctttcc |
213 |
Q |
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| T |
24729083 |
gtttaggacaataaagttataaattataatacatggattccaaggaattttacatacttaattgagattatacatgaaaagtctaaaaggctagctttcc |
24728984 |
T |
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| Q |
214 |
aaaagcttgagaacactggttcctgtttgagggaggggataggtag |
259 |
Q |
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| T |
24728983 |
aaaagcttgagaactttggttcctgtttgggggagggggtaggtag |
24728938 |
T |
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