View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18158_high_9 (Length: 250)
Name: NF18158_high_9
Description: NF18158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18158_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 16 - 231
Target Start/End: Complemental strand, 2149980 - 2149765
Alignment:
| Q |
16 |
aatatccaaagattcaacttgcagagaatggacaattgcctaaattcattgacaatgtttgttccatatgtcttagtgagtacaaaccaatggagacatt |
115 |
Q |
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| T |
2149980 |
aatatccaaagattcaacttgcagagaatggacaattgccaaaattcattgacaatgtttgttccatatgtcttagtgagtacaaaccaatggagacatt |
2149881 |
T |
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| Q |
116 |
aagaagtatacctcaatgtaatcatcatttccatgcagattgtatagatgtttggctcaagatgaatgctacttgccctttatgtagaaatttgccagag |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
2149880 |
aagaagtatacctcaatgtaatcatcatttccatgcagattgtatagatgtttggctcaagatgaatgctacttgccctttatgtagaaatttgcctgag |
2149781 |
T |
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| Q |
216 |
tgatgcatgtgctttg |
231 |
Q |
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|||||||||||||||| |
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| T |
2149780 |
tgatgcatgtgctttg |
2149765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 16 - 231
Target Start/End: Complemental strand, 2140971 - 2140756
Alignment:
| Q |
16 |
aatatccaaagattcaacttgcagagaatggacaattgcctaaattcattgacaatgtttgttccatatgtcttagtgagtacaaaccaatggagacatt |
115 |
Q |
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||||||||||||||||||| ||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2140971 |
aatatccaaagattcaactagcagagagtggacaattgcctaagtccattgacaatgtttgttccatatgtcttagtgagtacaaaccaatggagacatt |
2140872 |
T |
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| Q |
116 |
aagaagtatacctcaatgtaatcatcatttccatgcagattgtatagatgtttggctcaagatgaatgctacttgccctttatgtagaaatttgccagag |
215 |
Q |
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| T |
2140871 |
aagaagtatacctcaatgtaatcatcatttccatgcagattgtatagatgtttggctcaagatgaatgctacttgccctttatgtaaaaatttgcctgag |
2140772 |
T |
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| Q |
216 |
tgatgcatgtgctttg |
231 |
Q |
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| T |
2140771 |
tgatgcacgtgctttg |
2140756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 16 - 231
Target Start/End: Complemental strand, 2145505 - 2145290
Alignment:
| Q |
16 |
aatatccaaagattcaacttgcagagaatggacaattgcctaaattcattgacaatgtttgttccatatgtcttagtgagtacaaaccaatggagacatt |
115 |
Q |
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||||||||||||||||||| | ||||| ||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
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| T |
2145505 |
aatatccaaagattcaactagtagagagtggacaattgcctaagtccattgacaatgtttgttccatatgtcttggtgagtacaaacccatggagacatt |
2145406 |
T |
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| Q |
116 |
aagaagtatacctcaatgtaatcatcatttccatgcagattgtatagatgtttggctcaagatgaatgctacttgccctttatgtagaaatttgccagag |
215 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
2145405 |
aaggagtatacctcaatgtaatcatcatttccatgcagattgtatagatgtttggctcaagatgaatgctacttgccctttatgtagaaatttgcctgag |
2145306 |
T |
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| Q |
216 |
tgatgcatgtgctttg |
231 |
Q |
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|||||||||||||||| |
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| T |
2145305 |
tgatgcatgtgctttg |
2145290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 215
Target Start/End: Original strand, 42003993 - 42004054
Alignment:
| Q |
154 |
attgtatagatgtttggctcaagatgaatgctacttgccctttatgtagaaatttgccagag |
215 |
Q |
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|||||||||||| |||||||||| |||||||| |||||||| ||| ||||||| |||||| |
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| T |
42003993 |
attgtatagatggatggctcaagacaaatgctacctgccctttgtgtcgaaattttccagag |
42004054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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