View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18158_low_2 (Length: 718)

Name: NF18158_low_2
Description: NF18158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18158_low_2
NF18158_low_2
[»] chr4 (4 HSPs)
chr4 (11-165)||(32092188-32092337)
chr4 (614-700)||(32092789-32092875)
chr4 (433-486)||(32092608-32092661)
chr4 (280-353)||(32092452-32092528)


Alignment Details
Target: chr4 (Bit Score: 131; Significance: 1e-67; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 11 - 165
Target Start/End: Original strand, 32092188 - 32092337
Alignment:
Q  11 catcatcatcagtatctctccttccaccatttgagtctcaagatagcaacgcaacgcaacgcaacaagcatgtcaacaactacatcaatagccagcctta 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||| |    
T  32092188 catcatcatcagtatctctccttccaccatttgagtctcaagatagcaa-----cgcaacgcaacaagcatgtcaacaactacatcaatagccagcctga 32092282  T
Q  111 aactatggtccatcctctctgaatccaaacgaatcatcaacgctcactcccgtca 165  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32092283 aactatggtccatcctctctgaatccaaacgaatcatcaacgctcactcccgtca 32092337  T

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Target: chr4; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 614 - 700
Target Start/End: Original strand, 32092789 - 32092875
Alignment:
Q  614 gaaatcattcgcaccgtctccgccatcctcgtccttgcactctcccttctcatcttctacatccgtatctcatggacactctcctcc 700  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32092789 gaaatcattcgcactgtctccgccatcctcgttcttgcactctcccttctcatcttctacatccgtatctcatggacactctcctcc 32092875  T

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Target: chr4; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 433 - 486
Target Start/End: Original strand, 32092608 - 32092661
Alignment:
Q  433 agccaccatcacccacagcgtcttccacggcttcttcggccgtcccgtcaaact 486  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32092608 agccaccatcacccacagcgtcttccacggcttcttcggccgtcccgtcaaact 32092661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 280 - 353
Target Start/End: Original strand, 32092452 - 32092528
Alignment:
Q  280 tcttcgtcaagcaacgtctttacggtctctgcagttgcgcac---agaagatatcagatttacacctaaaacaacca 353  Q
    ||||||||||||||||||| ||| ||||||||||||||||||   |||||||||||| |||||||||||||||||||    
T  32092452 tcttcgtcaagcaacgtctctactgtctctgcagttgcgcacagaagaagatatcaggtttacacctaaaacaacca 32092528  T

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