View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18158_low_3 (Length: 507)

Name: NF18158_low_3
Description: NF18158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18158_low_3
NF18158_low_3
[»] chr1 (9 HSPs)
chr1 (18-500)||(50912360-50912838)
chr1 (18-164)||(38138016-38138159)
chr1 (18-161)||(43044981-43045121)
chr1 (18-161)||(43066870-43067010)
chr1 (18-161)||(43083825-43083965)
chr1 (18-161)||(3300715-3300855)
chr1 (108-166)||(40034847-40034905)
chr1 (108-159)||(7891113-7891164)
chr1 (18-55)||(43076828-43076865)
[»] chr4 (1 HSPs)
chr4 (18-161)||(4231446-4231586)
[»] chr8 (4 HSPs)
chr8 (108-159)||(1846557-1846608)
chr8 (18-60)||(4297463-4297505)
chr8 (108-166)||(4619757-4619815)
chr8 (118-166)||(4297560-4297608)
[»] chr2 (3 HSPs)
chr2 (18-54)||(33860822-33860858)
chr2 (116-160)||(34690922-34690966)
chr2 (116-160)||(34713334-34713378)


Alignment Details
Target: chr1 (Bit Score: 405; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 18 - 500
Target Start/End: Original strand, 50912360 - 50912838
Alignment:
Q  18 ttatctccctcaaaaccagagatgggaataaacggaatttcatctagattatcatagccaaccttctttagaaagggtgaaaggatcttgacaatttctt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  50912360 ttatctccctcaaaaccagagatgggaataaacggaatttcatctagattatcatagccaaccctctttagaaagggtgaaaggatcttaacaatttctt 50912459  T
Q  118 catacctacccttggagtatttgggagtagtagcatccatctgtcaagaaatatcatacgaattataaaaataattaaatgagaaatgctagccatgcca 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50912460 catacctacccttggagtatttgggagtagtagcatccatctgtcaagaaatatcatacgaattataaaaataattaaatgagaaatgctagccatgcca 50912559  T
Q  218 tctcatcgcactttttaacacactctaatcataattagccagtcatccacttattttagttaactcatttaccggaaaccagaagtaaaatttgcaaaac 317  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||    
T  50912560 tctcatcacactttttaacacactctaatcataattagccagtcatccacttatt----ttaactcatttaccggaaaccagaagtaaaatttgcaaaac 50912655  T
Q  318 aatttatttaacannnnnnnnaataatttgactgcaacttgtcgttgtccagtcatccaacgctggctttgagtaaataactttgtccatggatatatgt 417  Q
    |||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50912656 aatttatttaacattttttttaataatttgactgcaacttgtcgttgtccagtcatccaacgctggctttgagtaaataactttgtccatggatatatgt 50912755  T
Q  418 tttcttgattcatcttgctctgtttccttccaacctcgtctctattcacnnnnnnnagccatctcatatttgctttcttctca 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||| ||||||||||    
T  50912756 tttcttgattcatcttgctctgtttccttccaacctcgtctctattcactttttttagccatctcatatttgttttcttctca 50912838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 164
Target Start/End: Complemental strand, 38138159 - 38138016
Alignment:
Q  18 ttatctccctcaaaaccagagatgggaataaacggaatttcatctagattatcatagccaaccttctttagaaagggtgaaaggatcttgacaatttctt 117  Q
    |||||||||||||||||||||||||||| ||| |||||||||||||| ||||   ||||||| |   | | |||||||||||    ||| ||||||||||    
T  38138159 ttatctccctcaaaaccagagatgggaacaaatggaatttcatctaggttat---agccaacatcaatcaaaaagggtgaaaattccttcacaatttctt 38138063  T
Q  118 catacctacccttggagtatttgggagtagtagcatccatctgtcaa 164  Q
    |||||||| |||||||||||||||| ||||| |||||||||||||||    
T  38138062 catacctatccttggagtatttgggtgtagtggcatccatctgtcaa 38138016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 18 - 161
Target Start/End: Original strand, 43044981 - 43045121
Alignment:
Q  18 ttatctccctcaaaaccagagatgggaataaacggaatttcatctagattatcatagccaaccttctttagaaagggtgaaaggatcttgacaatttctt 117  Q
    |||||||||||||||||||||||||||| ||| |||||||  ||| | ||||   ||||||||||||| | | ||| |||||    ||| |||||||| |    
T  43044981 ttatctccctcaaaaccagagatgggaacaaatggaattttgtctgggttat---agccaaccttcttcaaataggatgaaacttccttcacaatttcat 43045077  T
Q  118 catacctacccttggagtatttgggagtagtagcatccatctgt 161  Q
    |||| |||||||||||||| ||||| ||||||||||||||||||    
T  43045078 catatctacccttggagtacttgggtgtagtagcatccatctgt 43045121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 18 - 161
Target Start/End: Complemental strand, 43067010 - 43066870
Alignment:
Q  18 ttatctccctcaaaaccagagatgggaataaacggaatttcatctagattatcatagccaaccttctttagaaagggtgaaaggatcttgacaatttctt 117  Q
    |||||||||||||||||||||||||||| ||| |||||||  ||| | ||||   ||||||||||||| | | ||| |||||    ||| |||||||| |    
T  43067010 ttatctccctcaaaaccagagatgggaacaaatggaattttgtctgggttat---agccaaccttcttcaaataggatgaaacttccttcacaatttcat 43066914  T
Q  118 catacctacccttggagtatttgggagtagtagcatccatctgt 161  Q
    |||| |||||||||||||| ||||| ||||||||||||||||||    
T  43066913 catatctacccttggagtacttgggtgtagtagcatccatctgt 43066870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 18 - 161
Target Start/End: Original strand, 43083825 - 43083965
Alignment:
Q  18 ttatctccctcaaaaccagagatgggaataaacggaatttcatctagattatcatagccaaccttctttagaaagggtgaaaggatcttgacaatttctt 117  Q
    |||||||||||||||||||||||||||| ||| |||||||  ||| | ||||   ||||||||||||| | | ||| |||||    ||| |||||||| |    
T  43083825 ttatctccctcaaaaccagagatgggaacaaatggaattttgtctgggttat---agccaaccttcttcaaataggatgaaacttccttcacaatttcat 43083921  T
Q  118 catacctacccttggagtatttgggagtagtagcatccatctgt 161  Q
    |||| |||||||||||||| ||||| ||||||||||||||||||    
T  43083922 catatctacccttggagtacttgggtgtagtagcatccatctgt 43083965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 161
Target Start/End: Original strand, 3300715 - 3300855
Alignment:
Q  18 ttatctccctcaaaaccagagatgggaataaacggaatttcatctagattatcatagccaaccttctttagaaagggtgaaaggatcttgacaatttctt 117  Q
    |||||||||||||||||||||||||||| ||| |||||||  ||| | ||||   ||||||||||||| | | ||| |||||    ||| ||||||||||    
T  3300715 ttatctccctcaaaaccagagatgggaacaaatggaattttgtctgggttat---agccaaccttcttcaaataggatgaaacttccttcacaatttctt 3300811  T
Q  118 catacctacccttggagtatttgggagtagtagcatccatctgt 161  Q
    ||||||||||||| ||||| || || ||||| ||||||||||||    
T  3300812 catacctacccttcgagtacttaggtgtagtggcatccatctgt 3300855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 108 - 166
Target Start/End: Complemental strand, 40034905 - 40034847
Alignment:
Q  108 acaatttcttcatacctacccttggagtatttgggagtagtagcatccatctgtcaaga 166  Q
    |||| ||||||| |||||||||| ||||||||||| ||||| |||||||||||||||||    
T  40034905 acaagttcttcaaacctacccttagagtatttgggtgtagttgcatccatctgtcaaga 40034847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 108 - 159
Target Start/End: Complemental strand, 7891164 - 7891113
Alignment:
Q  108 acaatttcttcatacctacccttggagtatttgggagtagtagcatccatct 159  Q
    ||||||| |||||||||| |||||||||||||||| ||||| ||||||||||    
T  7891164 acaatttgttcatacctatccttggagtatttgggtgtagtggcatccatct 7891113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 43076865 - 43076828
Alignment:
Q  18 ttatctccctcaaaaccagagatgggaataaacggaat 55  Q
    |||||||||||||||||||||||||||| ||| |||||    
T  43076865 ttatctccctcaaaaccagagatgggaacaaatggaat 43076828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 161
Target Start/End: Original strand, 4231446 - 4231586
Alignment:
Q  18 ttatctccctcaaaaccagagatgggaataaacggaatttcatctagattatcatagccaaccttctttagaaagggtgaaaggatcttgacaatttctt 117  Q
    |||||||||||||||||||||||||||| ||| ||||||| |||| | ||   ||||||||||||||| |   ||| ||| |    ||| |||||||| |    
T  4231446 ttatctccctcaaaaccagagatgggaacaaatggaattttatctgggtt---atagccaaccttcttcatgtaggatgatacttccttcacaatttcat 4231542  T
Q  118 catacctacccttggagtatttgggagtagtagcatccatctgt 161  Q
    ||||||| | ||||||||| ||||||||||| || |||||||||    
T  4231543 catacctgctcttggagtacttgggagtagtggcgtccatctgt 4231586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 108 - 159
Target Start/End: Original strand, 1846557 - 1846608
Alignment:
Q  108 acaatttcttcatacctacccttggagtatttgggagtagtagcatccatct 159  Q
    ||||||| |||||||||| |||||||||||||||| ||||| ||||||||||    
T  1846557 acaatttgttcatacctatccttggagtatttgggtgtagtggcatccatct 1846608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 4297463 - 4297505
Alignment:
Q  18 ttatctccctcaaaaccagagatgggaataaacggaatttcat 60  Q
    |||||||| ||||||| ||||||||||||||| ||||||||||    
T  4297463 ttatctccgtcaaaactagagatgggaataaatggaatttcat 4297505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 108 - 166
Target Start/End: Original strand, 4619757 - 4619815
Alignment:
Q  108 acaatttcttcatacctacccttggagtatttgggagtagtagcatccatctgtcaaga 166  Q
    |||| |||||||||||||  ||||||||||||||| | ||| |||||||||| ||||||    
T  4619757 acaaattcttcatacctatacttggagtatttgggtgcagtggcatccatctatcaaga 4619815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 118 - 166
Target Start/End: Original strand, 4297560 - 4297608
Alignment:
Q  118 catacctacccttggagtatttgggagtagtagcatccatctgtcaaga 166  Q
    |||||||| || ||||||||||||| ||||| |||||||||||| ||||    
T  4297560 catacctatccatggagtatttgggtgtagtggcatccatctgtgaaga 4297608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 33860822 - 33860858
Alignment:
Q  18 ttatctccctcaaaaccagagatgggaataaacggaa 54  Q
    |||||||||||||||||||||||||||| ||| ||||    
T  33860822 ttatctccctcaaaaccagagatgggaacaaatggaa 33860858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 116 - 160
Target Start/End: Original strand, 34690922 - 34690966
Alignment:
Q  116 ttcatacctacccttggagtatttgggagtagtagcatccatctg 160  Q
    |||||||||| |||||||||||||||| ||| | |||||||||||    
T  34690922 ttcatacctatccttggagtatttgggtgtaatggcatccatctg 34690966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 116 - 160
Target Start/End: Original strand, 34713334 - 34713378
Alignment:
Q  116 ttcatacctacccttggagtatttgggagtagtagcatccatctg 160  Q
    |||||||||| |||||||||||||||| ||| | |||||||||||    
T  34713334 ttcatacctatccttggagtatttgggtgtaatggcatccatctg 34713378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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