View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18158_low_4 (Length: 426)
Name: NF18158_low_4
Description: NF18158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18158_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 396; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 7 - 410
Target Start/End: Complemental strand, 39457689 - 39457286
Alignment:
| Q |
7 |
agataattctcaagtggatatatatttacctagtcttaaaactctccatttgcataagattgattttaaatgttatgagcatctaaagaatcttctatta |
106 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39457689 |
agatatttctcaagtggatatatatttacctagtcttaaaactctccatttgcataagattgattttaaatgttatgagcatctaaagaatcttctatta |
39457590 |
T |
|
| Q |
107 |
ggatgtcctgttctagcggatttggaaacaacaaaaagttgctttgtggccaattttttaagccgtttatcagcggactttatagccttacccagtttga |
206 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39457589 |
ggatgtcctgttctagaggatttggaaacaacaaaaagttgctttgtggccaattttttaagccgtttatcagcggactttatagccttacccagtttga |
39457490 |
T |
|
| Q |
207 |
tcaaggctaggatttgtgaattacatattccatttagtatggtttgtaaggcagagatcctacgtgtagaaagagtggtatgaatatcatatggtcctaa |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39457489 |
tcaaggctaggatttgtgaattacatattccatttagtatggtttgtaaggcagagatcctacgtgtagaaagagtggtatgaatatcatatggtcctaa |
39457390 |
T |
|
| Q |
307 |
ctcctaaataaataaaagtttgatgaaactatgattttcgtactatatatgcatatttaatgttgtgtcttgtgtaactcatgcagtggatgctcccatg |
406 |
Q |
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| T |
39457389 |
ctcctaaataaataaaagtttgatgaaactatgattttcgtactatatatgcatatttaatgttgtgtcttgtgtaactcatgcagtggatgctcccatg |
39457290 |
T |
|
| Q |
407 |
ttac |
410 |
Q |
| |
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|||| |
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| T |
39457289 |
ttac |
39457286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 7 - 398
Target Start/End: Original strand, 39437582 - 39437962
Alignment:
| Q |
7 |
agataattctcaagtggatatatatttacctagtcttaaaactctccatttgcataagattgattttaaatgttatgagcatctaaagaatcttctatta |
106 |
Q |
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||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||| || | |||| || || | ||| ||| ||||| |
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| T |
39437582 |
agatatttctcaagtggatttatatttacctagtcttcaaactctccatttgcataaggttgattttggatctcatgaacaactgatgaagcttttatta |
39437681 |
T |
|
| Q |
107 |
ggatgtcctgttctagcggatttggaaacaacaaaaagttgctttgtggccaattttttaagccgtttatcagcggactttatagccttacccagtttga |
206 |
Q |
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| |||||| |||||| ||||||||||||||| |||||||||||| || | | | | |||||| | | |||||||||| ||||||| | | | | |
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| T |
39437682 |
agctgtcctattctagaggatttggaaacaactaaaagttgctttatgttcggtctgagtaaccgttttttggtggactttataaccttacctaatataa |
39437781 |
T |
|
| Q |
207 |
tcaaggctaggatttgtgaattacatattccatttagtatggtttgtaaggcagagatcctacgtgtagaaagagtggtatgaatatcatatggtcctaa |
306 |
Q |
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||||||| |||||| ||||||| | ||||| |||||||||||||||| ||||||| | ||||| |||||| ||||||||| ||||| |||| |||| |
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| T |
39437782 |
tcaaggcaaggattagtgaattctttgttccacttagtatggtttgtaaagcagagaacttacgtatagaaaaagtggtatgtatatc--gtggtgctaa |
39437879 |
T |
|
| Q |
307 |
ctcctaaataaataaaagtttgatgaaactatgattttcgtactatatatgcatatttaatgttgtgtcttgtgtaactcatgcagtggatg |
398 |
Q |
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| T |
39437880 |
ctcc----taaataaacctttaataaaattgtga-tttcgcactata----catatttaatgttatgtcttgtgtaactcttgcagtggatg |
39437962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 7 - 389
Target Start/End: Original strand, 39424559 - 39424933
Alignment:
| Q |
7 |
agataattctcaagtggatatatatttacctagtcttaaaactctccatttgcataagattgattttaaatgttatgagcatctaaagaatcttctatta |
106 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||||||||||||||| ||| | |||||||| ||||| |||||||||||| ||| || ||||| |
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| T |
39424559 |
agataattctcaagtggatttacatttacctagtcttaaaactctccatttgaatagggttgattttgaatgtcatgagcatctaatgaagattttatta |
39424658 |
T |
|
| Q |
107 |
ggatgtcctgttctagcggatttggaaacaacaaaaagttgctttgtggccaattttttaagccgtttatcagcggactttatagccttacccagtttga |
206 |
Q |
| |
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| |||||| |||||| ||||||||| ||| || ||||| |||| |||| ||||||||| || | || ||| |||||| |||| ||||| |
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| T |
39424659 |
agttgtcctattctagaggatttgga---aactaagctttgctgtgtgatggatttccaaagccgtttttcggatgaatttgcagcctttcccaatttga |
39424755 |
T |
|
| Q |
207 |
tcaaggctaggatttgtgaattacatattccatttagtatggtttgtaaggcagagatcctacgtgtagaaagagtggtatgaatatcatatggtcctaa |
306 |
Q |
| |
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||||||| |||||| |||||| |||||||| |||||||||||||||||||| ||| |||| | | || ||||||||||||||| | ||||||| |
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| T |
39424756 |
tcaaggcaaggattactgaattctatattccacttagtatggtttgtaaggcaaagacgctacatattga---agtggtatgaatatc--gtcgtcctaa |
39424850 |
T |
|
| Q |
307 |
ctcctaaataaataaaagtttgatgaaactatgattttcgtactatatatgcatat----ttaatgttgtgtcttgtgtaactcatg |
389 |
Q |
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|||| |||||||| |||| || || | |||||||| ||||||| || ||||| ||||||||||||||||||| ||||||| |
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| T |
39424851 |
ctcc----taaataaacgtttaatttaattttgattttcttactatacatacatatctaattaatgttgtgtcttgtgtgactcatg |
39424933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 14 - 137
Target Start/End: Complemental strand, 39463201 - 39463078
Alignment:
| Q |
14 |
tctcaagtggatatatatttacctagtcttaaaactctccatttgcataagattgattttaaatgttatgagcatctaaagaatcttctattaggatgtc |
113 |
Q |
| |
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|||||||||||| ||||||||||||||| ||||| |||||||||| ||| | |||| ||| |||| |||||||||||| ||| ||| ||||| | |||| |
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| T |
39463201 |
tctcaagtggatttatatttacctagtcctaaaattctccatttgaatagggttgagtttggatgtcatgagcatctaatgaagcttttattaagctgtc |
39463102 |
T |
|
| Q |
114 |
ctgttctagcggatttggaaacaa |
137 |
Q |
| |
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|| || ||| |||||||||||||| |
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| T |
39463101 |
ctattttagaggatttggaaacaa |
39463078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 364 - 408
Target Start/End: Complemental strand, 39462856 - 39462812
Alignment:
| Q |
364 |
taatgttgtgtcttgtgtaactcatgcagtggatgctcccatgtt |
408 |
Q |
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||||||||||||||||||||||||| ||||||| |||||||||| |
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| T |
39462856 |
taatgttgtgtcttgtgtaactcattcagtggacactcccatgtt |
39462812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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